Parental gene: | RNFT1, ENSSSCG00000017671 |
| Aliases: | None |
| Description: | ring finger protein, transmembrane 1 [Source:HGNC Symbol;Acc:30206] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 12:37534659..37542007(+) |
>ENSSSCG00000017671
CTGCCACAGTTCCTGCGGTCGCTGCCCGGGCCCTGGTCCGCCCATCGTCATGAGAGGAGACAGAGCCTTGAAGCCAAGAA
CTCTGAATCACAGAAAAAGTATTCCAGGGTCATGCAAGCCAACTGTAGCCAACTGCACAGTTCTCCACAAACTGCAGGTG
GTGAGGATGCCTCAGTCTCCCAGTGTGTCCAAACGAGATTGACAGGAGAAGCCTCCTGTCTTTATTCTGGAGATGTTCAT
ATCCAGATAAACACCATACCTAAAGAATGTGCTGAAAATCCAAGCTCCAGAAATGTGAGATCAGGTGTCCATAGCTGTAC
CCATGGATGTGTTCATAGTCGCTTACGGAGTCACTCCCACAATGAAGCAAGGCAGCCTGATGATAACGACACAGAGTCTG
GCGATCATGGTAGTAGCTCCTTCTCAGAATTCCGATATCTCTTCAAGTGGCTGCAAAAAAGTCTTCCATATATTTTGATT
CTGGGTGTCAAACTTGTTATGCAGCATATTACAGGAATTTCTCTTGGAATTGGGCTGCTTACAACTTTTATATATGCAAA
CAAAAGCATTATAAATCAGGTTTTTCTAAGAGAGAGGTGCTCAAAGATCCAGTGTGCTTGGTTACTGGTATTCTTGGCAG
GATCTTCTGTTCTTTTGTATTACACCTTTCACTCTCAGTCACTTTATTACAGCTTAATTTTTTTAAATCCCACTTTGGAC
TATTCGAGTTTCTGGGAAGTACTTTGGATTGTTGGAATTACAGACTTCATTTTGAAATTCCTCTTCATGGGCTTAAAATG
CCTTATTTTATTGGTGCCTTCTTTCGTCATGCCTTTTAAATCCAAGGGTTATTGGTATATGCTTTTAGAAGAGTTATGTC
AGTATTACCGAACGTTTGTTCCCATACCAGTTTGGTTCCGTTACCTTATAAGCTATGGGGAGTTTGGTAATGTAACTAGA
TGGAGTCTTGGAATATTGCTGGCTTTACTCTACCTCATACTAAAACTTCTGGACTTTTTTGGACATCTGAAAACTTTCAC
ACGGGTTTTGCGAATATTTTTTACACGACCA
CTGCCACAGTTCCTGCGGTCGCTGCCCGGGCCCTGGTCCGCCCATCGTCATGAGAGGAGACAGAGCCTTGAAGCCAAGAA
CTCTGAATCACAGAAAAAGTATTCCAGGGTCATGCAAGCCAACTGTAGCCAACTGCACAGTTCTCCACAAACTGCAGGTG
GTGAGGATGCCTCAGTCTCCCAGTGTGTCCAAACGAGATTGACAGGAGAAGCCTCCTGTCTTTATTCTGGAGATGTTCAT
ATCCAGATAAACACCATACCTAAAGAATGTGCTGAAAATCCAAGCTCCAGAAATGTGAGATCAGGTGTCCATAGCTGTAC
CCATGGATGTGTTCATAGTCGCTTACGGAGTCACTCCCACAATGAAGCAAGGCAGCCTGATGATAACGACACAGAGTCTG
GCGATCATGGTAGTAGCTCCTTCTCAGAATTCCGATATCTCTTCAAGTGGCTGCAAAAAAGTCTTCCATATATTTTGATT
CTGGGTGTCAAACTTGTTATGCAGCATATTACAGGAATTTCTCTTGGAATTGGGCTGCTTACAACTTTTATATATGCAAA
CAAAAGCATTATAAATCAGGTTTTTCTAAGAGAGAGGTGCTCAAAGATCCAGTGTGCTTGGTTACTGGTATTCTTGGCAG
GATCTTCTGTTCTTTTGTATTACACCTTTCACTCTCAGTCACTTTATTACAGCTTAATTTTTTTAAATCCCACTTTGGAC
TATTCGAGTTTCTGGGAAGTACTTTGGATTGTTGGAATTACAGACTTCATTTTGAAATTCCTCTTCATGGGCTTAAAATG
CCTTATTTTATTGGTGCCTTCTTTCGTCATGCCTTTTAAATCCAAGGGTTATTGGTATATGCTTTTAGAAGAGTTATGTC
AGTATTACCGAACGTTTGTTCCCATACCAGTTTGGTTCCGTTACCTTATAAGCTATGGGGAGTTTGGTAATGTAACTAGA
TGGAGTCTTGGAATATTGCTGGCTTTACTCTACCTCATACTAAAACTTCTGGACTTTTTTGGACATCTGAAAACTTTCAC
ACGGGTTTTGCGAATATTTTTTACACGACCA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 8 .63 RPM |
| SRP014902_testis | 15 .98 RPM |
| SRP018856_adipose | 11 .27 RPM |
| SRP018288_kidney | 29 .95 RPM |
| SRP018288_lung | 9 .67 RPM |
| SRP018288_liver | 27 .98 RPM |
| SRP018288_heart | 22 .53 RPM |
| SRP035408_liver | 5 .87 RPM |
| SRP035408_brain | 0 .95 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000009747 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000014736 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_523 | 77.11 | 56.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_1201 | 89.66 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000017671 retrocopies