Parental gene: | acta1, ENSXETG00000021417 |
| Aliases: | None |
| Description: | actin, alpha 1, skeletal muscle [Source:Jamboree;Acc:XB-GENE-491938] |
| Organism: | Xenopus (Xenopus tropicalis) |
| Coordinates: | GL173443.1:264754..271119(-) |
>ENSXETG00000021417
ATGTGTGACGATGAAGAGACTACCGCACTTGTGTGTGACAATGGCTCCGGACTTGTAAAAGCTGGGTTCGCTGGAGATGA
TGCTCCAAGAGCAGTGTTTCCATCTATTGTTGGACGCCCCCGCCACCAGGGTGTCATGGTTGGTATGGGTCAAAAGGACT
CCTATGTAGGTGATGAAGCACAGAGCAAGAGAGGTATTCTTACACTAAAGTATCCAATTGAACATGGTATTATCACTAAC
TGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTGCGTGTAGCCCCTGAAGAGCATCCCACCCTGCT
TACTGAGGCTCCACTGAACCCTAAAGCTAACCGTGAAAAGATGACTCAAATAATGTTTGAGACTTTCAACGTCCCAGCTA
TGTATGTTGCAATCCAGGCAGTGCTTTCTCTATACGCCTCTGGCCGTACAACTGGGATTGTGCTCGACTCTGGGGATGGT
GTGACACACAATGTACCAATTTATGAAGGGTATGCCTTACCCCATGCCATCATGCGCCTTGATTTGGCTGGCCGTGATCT
TACTGACTACTTAATGAAAATTCTGACAGAACGTGGCTACTCTTTTGTCACCACTGCTGAACGTGAAATTGTTCGTGACA
TCAAGGAAAAACTCTGTTATGTGGCTCTGGACTTTGAGAATGAAATGGCCACTGCTGCCTCCTCATCTTCTCTAGAAAAG
AGCTATGAACTGCCTGATGGTCAAGTTATAACCATTGGAAATGAACGTTTCCGTTGCCCAGAGACTCTCTTCCAACCATC
ATTTATTGGTATGGAATCTGCTGGTATTCATGAAACAACATACAACAGCATTATGAAGTGCGATATTGACATTAGAAAGG
ATCTCTATGCTAATAATGTGATGTCTGGAGGTACCACCATGTACCCAGGTATTGCTGACCGTATGCAGAAGGAGATTACA
GCCCTGGCTCCCAGCACAATGAAAATCAAGATCATTGCTCCTCCTGAGCGTAAATATTCTGTCTGGATTGGTGGATCCAT
TCTGGCTTCCCTTTCAACTTTCCAGCAGATGTGGATTACAAAACAAGAATATGATGAAGCTGGTCCCTCTATTGTCCACC
GTAAATGCTTCTAA
ATGTGTGACGATGAAGAGACTACCGCACTTGTGTGTGACAATGGCTCCGGACTTGTAAAAGCTGGGTTCGCTGGAGATGA
TGCTCCAAGAGCAGTGTTTCCATCTATTGTTGGACGCCCCCGCCACCAGGGTGTCATGGTTGGTATGGGTCAAAAGGACT
CCTATGTAGGTGATGAAGCACAGAGCAAGAGAGGTATTCTTACACTAAAGTATCCAATTGAACATGGTATTATCACTAAC
TGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTGCGTGTAGCCCCTGAAGAGCATCCCACCCTGCT
TACTGAGGCTCCACTGAACCCTAAAGCTAACCGTGAAAAGATGACTCAAATAATGTTTGAGACTTTCAACGTCCCAGCTA
TGTATGTTGCAATCCAGGCAGTGCTTTCTCTATACGCCTCTGGCCGTACAACTGGGATTGTGCTCGACTCTGGGGATGGT
GTGACACACAATGTACCAATTTATGAAGGGTATGCCTTACCCCATGCCATCATGCGCCTTGATTTGGCTGGCCGTGATCT
TACTGACTACTTAATGAAAATTCTGACAGAACGTGGCTACTCTTTTGTCACCACTGCTGAACGTGAAATTGTTCGTGACA
TCAAGGAAAAACTCTGTTATGTGGCTCTGGACTTTGAGAATGAAATGGCCACTGCTGCCTCCTCATCTTCTCTAGAAAAG
AGCTATGAACTGCCTGATGGTCAAGTTATAACCATTGGAAATGAACGTTTCCGTTGCCCAGAGACTCTCTTCCAACCATC
ATTTATTGGTATGGAATCTGCTGGTATTCATGAAACAACATACAACAGCATTATGAAGTGCGATATTGACATTAGAAAGG
ATCTCTATGCTAATAATGTGATGTCTGGAGGTACCACCATGTACCCAGGTATTGCTGACCGTATGCAGAAGGAGATTACA
GCCCTGGCTCCCAGCACAATGAAAATCAAGATCATTGCTCCTCCTGAGCGTAAATATTCTGTCTGGATTGGTGGATCCAT
TCTGGCTTCCCTTTCAACTTTCCAGCAGATGTGGATTACAAAACAAGAATATGATGAAGCTGGTCCCTCTATTGTCCACC
GTAAATGCTTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 8 .86 RPM |
| SRP007412_skeletal_muscle | 63692 .60 RPM |
| SRP007412_heart | 17421 .20 RPM |
| SRP007412_kidney | 17421 .20 RPM |
| SRP007412_liver | 26 .57 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Nomascus leucogenys | ENSNLEG00000014347 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000002854 | ortholog_one2one | 1 retrogene | |
| Xenopus tropicalis | ENSXETG00000025116 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_xtro_24 | 99.73 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSXETG00000021417 retrocopies