RetrogeneDB ID: | retro_acar_110 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 3:145590746..145591121(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB6 | ||
Ensembl ID: | ENSACAG00000001263 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.4 % |
Parental protein coverage: | 98.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VMGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPEKPGLVEGFWQNFLKPGGLWRTQVYKTYKAGAF |
VMGYTPDEKLRLQQLREL.R.WLK.QELS.REPVLP..KPGLVEGFWQNFLKPGGLWRTQV.KTYKAG.F | |
Retrocopy | VMGYTPDEKLRLQQLRELWRCWLKEQELSLREPVLPLQKPGLVEGFWQNFLKPGGLWRTQVCKTYKAGVF |
Parental | VFTGILVPFWLTHYYVKYHLLYQPYGAVVSKPKIFPGDTILETKEVVPPLEIPDS |
VFTGI..PFWLTHYYVKYHLL.QPYG.V..KPKIFPGDTILET.EVVP.LEIP.S | |
Retrocopy | VFTGIFAPFWLTHYYVKYHLLHQPYGVVAFKPKIFPGDTILETNEVVPALEIPQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 108 .51 RPM |
SRP009831_brain | 0 .00 RPM | 103 .67 RPM |
SRP009831_dewlap | 0 .00 RPM | 80 .11 RPM |
SRP009831_embryo | 0 .00 RPM | 79 .52 RPM |
SRP009831_heart | 0 .00 RPM | 128 .72 RPM |
SRP009831_liver | 0 .00 RPM | 141 .77 RPM |
SRP009831_lung | 0 .00 RPM | 75 .11 RPM |
SRP009831_ovary | 0 .04 RPM | 84 .75 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 127 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000001263 | 3 retrocopies |
retro_acar_110 , retro_acar_116, retro_acar_117,
|
Callithrix jacchus | ENSCJAG00000007852 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019864 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000007428 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000011003 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013268 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002785 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012172 | 1 retrocopy |