RetrogeneDB ID: | retro_tbel_197 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1426:391367..391747(+) | ||
Located in intron of: | ENSTBEG00000015069 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB6 | ||
Ensembl ID: | ENSTBEG00000013268 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa [Source:HGNC Symbol;Acc:7701] |
Percent Identity: | 79.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQRLWPLEEFWNKFLQNRT-PWRNMVYKAYGHSI |
MSGYT.DEKLR.QQL.ELR..WLKDQE.SPREPVLPPQRLWP.EEF.NKF..NRT.PWRNMVY..Y.HSI | |
Retrocopy | MSGYTLDEKLRPQQLQELRGTWLKDQEQSPREPVLPPQRLWPSEEFRNKFW*NRT<PWRNMVYTTYQHSI |
Parental | FAFTHVLI-PTWII-HYYLKYHVNTKPYAIVETKPRIFPGDTILETGEIIPPMKEFPDQHH |
.AFTHVLI.P.WII..Y..KYHV.TKPYA..ETKPRIFPGD.ILET.EIIPPMK.FPDQHH | |
Retrocopy | SAFTHVLI>PAWII<YYH-KYHVDTKPYATFETKPRIFPGDAILETREIIPPMKGFPDQHH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000001263 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000007852 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019864 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000007428 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000011003 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013268 | 2 retrocopies |
retro_tbel_195, retro_tbel_197 ,
|
Tarsius syrichta | ENSTSYG00000002785 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012172 | 1 retrocopy |