RetrogeneDB ID: | retro_acar_133 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 5:66517911..66518652(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000014253 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MLGPRTLLRGALAAARGFPGQVSSSFATGPRQHDGTFYEFRTYTVKPSKMKEFLDLTNKNIHLRTAHSPL |
MLG.RTLL.GA..AA.....QVS.SFA.GPRQHDGTFY.F.TYTVKPSKM.EFLDLT..NIH..TAHSP. | |
Retrocopy | MLGSRTLLQGAMVAAWEIAAQVS*SFAIGPRQHDGTFYDFCTYTVKPSKMEEFLDLTS*NIHFYTAHSPM |
Parental | VGYWTLELGGLNKTFHIWKYESFAQRTAVRTALANDQAWKEKYLSQMLPMLDKQENEIAYLVP-WCELGS |
.GYWTLELGGL.KTF.IWKYESFAQ.TAVRTALA.DQAW.EK.LSQM.P.L..Q.NEIAYLVP.WCELGS | |
Retrocopy | LGYWTLELGGLEKTFYIWKYESFAQKTAVRTALAKDQAWQEKCLSQMFPLLERQDNEIAYLVP>WCELGS |
Parental | SEKDGVYELVTFNMKPGGPAVWGQSFKAAINAHVKTGYTKLIGVFHTE-YGNLNRVHVLWWSESPDSRAS |
SEKDGVYELV.F.MKPGGPA.WGQSFK..I.AHVK.GYTKLIGVFHT..YG.LNRVHVLWW.ESPDS.AS | |
Retrocopy | SEKDGVYELVNFHMKPGGPAMWGQSFKKTIYAHVKMGYTKLIGVFHTD<YGKLNRVHVLWWNESPDSQAS |
Parental | GRHYAHEDPRVVAAVRESVQFLESQQNCLLVPTAFSPLK |
.RHY.H.DPRVV.AV.E.VQFLE.QQ.CLLVPTAFSPLK | |
Retrocopy | RRHYVHKDPRVVVAVHEHVQFLEAQQTCLLVPTAFSPLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 16 .05 RPM |
SRP009831_brain | 0 .00 RPM | 35 .27 RPM |
SRP009831_dewlap | 0 .00 RPM | 25 .90 RPM |
SRP009831_embryo | 0 .00 RPM | 62 .48 RPM |
SRP009831_heart | 0 .00 RPM | 4 .25 RPM |
SRP009831_liver | 0 .00 RPM | 164 .43 RPM |
SRP009831_lung | 0 .00 RPM | 7 .15 RPM |
SRP009831_ovary | 0 .00 RPM | 27 .72 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 3 .72 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014253 | 1 retrocopy |
retro_acar_133 ,
|
Ailuropoda melanoleuca | ENSAMEG00000005118 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000023949 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009373 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000943 | 1 retrocopy | |
Equus caballus | ENSECAG00000008088 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016120 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010147 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007103 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007880 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012307 | 1 retrocopy |