RetrogeneDB ID: | retro_ecab_978 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 8:69781609..69782244(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NIPSNAP3B | ||
Ensembl ID: | ENSECAG00000008088 | ||
Aliases: | None | ||
Description: | nipsnap homolog 3B (C. elegans) [Source:HGNC Symbol;Acc:23641] |
Percent Identity: | 67.12 % |
Parental protein coverage: | 92.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | GPRQYDGTFYEFRT-YCLKPSKMNEYMEKIKKNIHLRTAHSELVGFWSVEFGGRMNKVFHIWKYDNFAHR |
GPRQYDGTFYEF.T.YCLKPSK..E..E.IKKN.HL.TA.SELVG.WS..F.GRMNKVFH.WKYD.FAH. | |
Retrocopy | GPRQYDGTFYEFHT<YCLKPSKIDEFLENIKKNLHL*TAPSELVGLWSAKFVGRMNKVFHVWKYDSFAHQ |
Parental | TEVRKALAKDREWQEQFLIPSLALIDKQEFEIAYLVPWSKLEKPP-KEGV-YELATFQMKPGGPALWGEP |
.EV.K.LAK....QEQ.LIP.LALIDKQEFEI.Y.VPW.K.EK.P.KE.....L..FQMKPGGPALWG.. | |
Retrocopy | GEVWKGLAKNKACQEQLLIPNLALIDKQEFEITYVVPWCKIEKRP>KESMSFHLVIFQMKPGGPALWGDA |
Parental | FKRAVNAHVNRGYSKL-VGVFHTEYGTLNRVHVLW-WNESADSRAAG-RHESHEDPR-VVAAVRESVNYL |
FKR.V.AHVN.G..KL.VGV.H.EYG...R.HVLW..NESADS.AAG.RH..HED......AV.E..NY. | |
Retrocopy | FKRTVDAHVNIGCTKL<VGVVHPEYGAPSRDHVLW<VNESADSHAAG<RHQFHEDLN<LAVAVWENLNYQ |
Parental | VSQQNMLLI |
.S..NMLLI | |
Retrocopy | MSHKNMLLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 2 .66 RPM |
SRP021940_cerebellum | 0 .00 RPM | 3 .95 RPM |
SRP021940_embryo | 0 .00 RPM | 4 .01 RPM |
SRP021940_placental_villous | 0 .00 RPM | 3 .70 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 2 .96 RPM |
SRP021940_testis | 0 .00 RPM | 1 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_295 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014253 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000005118 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000943 | 1 retrocopy | |
Equus caballus | ENSECAG00000008088 | 1 retrocopy |
retro_ecab_978 ,
|
Echinops telfairi | ENSETEG00000016120 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007103 | 1 retrocopy |