RetrogeneDB ID:

retro_acar_136

Retrocopy
location
Organism:Anole lizard (Anolis carolinensis)
Coordinates:5:127596595..127597086(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPL2
Ensembl ID:ENSACAG00000005134
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_acar_136
ATGGCTCTGTCAGGCTTGATCCAGACCTTTAGGTCATGCTGCTGTCTTCCAGCCACCATCTCACAAGGATACCTGTGTCC
TCTATGCCCATTTCTCTAGCAAGTGAACTCCAAATCCGCCATGAAATTGGGACTTCTGCCATGGTGTCTGCTAGAGATAT
GCTGTGGAAATGCAGGACCAAGTACATCATAAAGCCCATTCCTTTAAGAAAAACAGGAGGCTGAGATCACACAGGACGTA
TCAGTGTGCATGGAATTGGGGGAGGAAGGAAGCAGTGCTACCGTATGATTGATTTCCGAAGATTGAATTATGAAGAAGGA
ACAGAGCCTGGTCCATTTGATGAGAAAGTGATTCAGGTCTGGTATGATCAATGCCAGTCAGCCGATATAGATCTGGTAGC
TGCAGGGAAGCGGAAACGCTGGATCATTGCAACAGAAAACATGGAAGTTGGTGACATCATCAAAACGTCAGGACACACAG
GCAGTCTCAGC

ORF - retro_acar_136 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.09 %
Parental protein coverage: 55.59 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMTLSGLIQTFRS-LLLSSSPHLTRIPVSSMPISLASQLQIRHEIGTSAVVSARDMLWKCRTKYTIKPIPL
M.LSGLIQTFRS..LLSSS.HLTRIPVSSMPISLAS.LQIRHEIGTSA.VSARDMLWKCRTKY.IKPIPL
RetrocopyMALSGLIQTFRS<MLLSSSHHLTRIPVSSMPISLASELQIRHEIGTSAMVSARDMLWKCRTKYIIKPIPL
ParentalRKTGGRDHTGRISVHGIGGGRKQCYRMIDFRRLNYEEGTEPGPFDEKVVQVRYDPCRSADIALVAGGKRK
RKTGG.DHTGRISVHGIGGGRKQCYRMIDFRRLNYEEGTEPGPFDEKV.QV.YD.C.SADI.LVA.GKRK
RetrocopyRKTGG*DHTGRISVHGIGGGRKQCYRMIDFRRLNYEEGTEPGPFDEKVIQVWYDQCQSADIDLVAAGKRK
ParentalRWIIATENMEVGDIIKTSGHIGRMA
RWIIATENMEVGDIIKTSGH.G...
RetrocopyRWIIATENMEVGDIIKTSGHTGSLS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP009831_adrenal 0 .00 RPM 47 .66 RPM
SRP009831_brain 0 .00 RPM 35 .51 RPM
SRP009831_dewlap 0 .00 RPM 72 .48 RPM
SRP009831_embryo 0 .00 RPM 52 .99 RPM
SRP009831_heart 0 .00 RPM 52 .09 RPM
SRP009831_liver 0 .00 RPM 50 .96 RPM
SRP009831_lung 0 .00 RPM 42 .31 RPM
SRP009831_ovary 0 .00 RPM 61 .93 RPM
SRP009831_skeletal_muscle 0 .00 RPM 60 .79 RPM
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_136 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_136 was not experimentally validated.

Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG00000005134 1 retrocopy
retro_acar_136 ,
Callithrix jacchus ENSCJAG000000051161 retrocopy
Homo sapiens ENSG000001126511 retrocopy
Gorilla gorilla ENSGGOG000000105521 retrocopy
Macaca mulatta ENSMMUG000000024501 retrocopy
Nomascus leucogenys ENSNLEG000000043701 retrocopy
Otolemur garnettii ENSOGAG000000344212 retrocopies
Pongo abelii ENSPPYG000000166301 retrocopy
Pan troglodytes ENSPTRG000000181861 retrocopy
Rattus norvegicus ENSRNOG000000180571 retrocopy



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