RetrogeneDB ID: | retro_acar_136 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 5:127596595..127597086(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL2 | ||
Ensembl ID: | ENSACAG00000005134 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.09 % |
Parental protein coverage: | 55.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MTLSGLIQTFRS-LLLSSSPHLTRIPVSSMPISLASQLQIRHEIGTSAVVSARDMLWKCRTKYTIKPIPL |
M.LSGLIQTFRS..LLSSS.HLTRIPVSSMPISLAS.LQIRHEIGTSA.VSARDMLWKCRTKY.IKPIPL | |
Retrocopy | MALSGLIQTFRS<MLLSSSHHLTRIPVSSMPISLASELQIRHEIGTSAMVSARDMLWKCRTKYIIKPIPL |
Parental | RKTGGRDHTGRISVHGIGGGRKQCYRMIDFRRLNYEEGTEPGPFDEKVVQVRYDPCRSADIALVAGGKRK |
RKTGG.DHTGRISVHGIGGGRKQCYRMIDFRRLNYEEGTEPGPFDEKV.QV.YD.C.SADI.LVA.GKRK | |
Retrocopy | RKTGG*DHTGRISVHGIGGGRKQCYRMIDFRRLNYEEGTEPGPFDEKVIQVWYDQCQSADIDLVAAGKRK |
Parental | RWIIATENMEVGDIIKTSGHIGRMA |
RWIIATENMEVGDIIKTSGH.G... | |
Retrocopy | RWIIATENMEVGDIIKTSGHTGSLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 47 .66 RPM |
SRP009831_brain | 0 .00 RPM | 35 .51 RPM |
SRP009831_dewlap | 0 .00 RPM | 72 .48 RPM |
SRP009831_embryo | 0 .00 RPM | 52 .99 RPM |
SRP009831_heart | 0 .00 RPM | 52 .09 RPM |
SRP009831_liver | 0 .00 RPM | 50 .96 RPM |
SRP009831_lung | 0 .00 RPM | 42 .31 RPM |
SRP009831_ovary | 0 .00 RPM | 61 .93 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 60 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005134 | 1 retrocopy |
retro_acar_136 ,
|
Callithrix jacchus | ENSCJAG00000005116 | 1 retrocopy | |
Homo sapiens | ENSG00000112651 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010552 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002450 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004370 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034421 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016630 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018186 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018057 | 1 retrocopy |