RetrogeneDB ID: | retro_ogar_1582 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873553.1:9706718..9707212(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL2 | ||
Ensembl ID: | ENSOGAG00000034421 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L2 [Source:HGNC Symbol;Acc:14056] |
Percent Identity: | 87.95 % |
Parental protein coverage: | 54.28 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MALWALTRALGSLNLAPQAVAAPVSSLLPAAQVMNNAFLQLPSALTLLPYRTVLTSVALKAKFVSWKSHT |
MALWALTRALGSLNL.PQA.AAPVSSLLP..QVMNNAFLQLPSAL.LLPYRTVLTSVALKAKFVSWKSHT | |
Retrocopy | MALWALTRALGSLNLEPQAIAAPVSSLLPTTQVMNNAFLQLPSALMLLPYRTVLTSVALKAKFVSWKSHT |
Parental | KYTIRPLKKRKSGGRDHTGRIRVHG-IGGGHKQLYRMIDFLRFRPEQETKPEPFEERVITVRYDPCRSAD |
KYTIRP.KK..SGG.DHTG.I.VHG...GGHKQLY.MIDFLRF.PEQETKP.PFE..VI.VRYDPCRSAD | |
Retrocopy | KYTIRPWKK**SGG*DHTGHIQVHG<FRGGHKQLYCMIDFLRFQPEQETKP*PFEDKVIRVRYDPCRSAD |
Parental | IALVAGGSRKRWIVATENMQAGDVIL |
IALVAGGSRKRWIVATENMQAGDVIL | |
Retrocopy | IALVAGGSRKRWIVATENMQAGDVIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005134 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005116 | 1 retrocopy | |
Homo sapiens | ENSG00000112651 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010552 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002450 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004370 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034421 | 2 retrocopies |
retro_ogar_1582 , retro_ogar_1842,
|
Pongo abelii | ENSPPYG00000016630 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018186 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018057 | 1 retrocopy |