RetrogeneDB ID: | retro_acar_144 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 6:54097290..54098299(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB14 | ||
Ensembl ID: | ENSACAG00000012468 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.7 % |
Parental protein coverage: | 89.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | PTQAAKVLLEAIMKNGSAAGSGAYCRKPANSSDQSKPNNVKDSSATAAGESGKTYTKDQVEGVQSIKKCK |
P..A.K.LLEAIMKNGSAAGSG.YC..PANSSDQ.KPNN.KDSSATAA.E.GKTYTKDQVE...SIK.CK | |
Retrocopy | PNPATKMLLEAIMKNGSAAGSGVYCQTPANSSDQNKPNNIKDSSATAARENGKTYTKDQVE---SIKQCK |
Parental | -NYYEVLGVSKDAGEEDLKKAYRKLALKFHPDKNHAPGATEA-FKKIGNAYGVLSNPEKRKQYDLTGGEE |
.N.YEVL.VSKDA.EE.LK.AY.KLALKFHPDKN..PGATEA.FKK.GNAYGVLSN.EKRKQ.D.TGGEE | |
Retrocopy | >NHYEVLEVSKDASEEYLKEAYQKLALKFHPDKNYPPGATEA<FKKNGNAYGVLSNQEKRKQIDHTGGEE |
Parental | QCSHPGNGRFNFHRGCEADITPEDLFNMFFGGAFPTGSVHSFSNGRSGYSHHNQHRHSGHEREEERGDGG |
QCSHPGN.RFNFHR.CEADIT.EDL.NM.FGGAFP.GSVHSFSNG.SG.SHH.Q..HSGHEREE.R.DGG | |
Retrocopy | QCSHPGNDRFNFHRDCEADITSEDLVNMLFGGAFPSGSVHSFSNG*SGDSHHYQQCHSGHEREEKRVDGG |
Parental | FSMFIQLMPIIVLILVSLLSQLMVSNPPYSLYPRSGSGQTIEMKTENL-RIPYYVNKDFKNEYKGPNLQK |
FS...QLMPIIVLILVSLL.QLMVS.PPYSLY..SGSGQT.EMKT.NL..IP.Y.NKDFKNE.KGPN.QK | |
Retrocopy | FSTLGQLMPIIVLILVSLLKQLMVSYPPYSLYRGSGSGQTTEMKTKNL>HIPDYANKDFKNEHKGPNFQK |
Parental | IEKSVEEDYVSNIRNNCWKERQQKTDLLYAAKVYRDERLRRKAEAISMDNCKELERLTSLYR |
.EKSVEEDYVSNIRNNCWKERQQKTDLL.AAKVY..E.LRRKAEAI..DNCKEL.RLTSLY. | |
Retrocopy | VEKSVEEDYVSNIRNNCWKERQQKTDLLCAAKVY*NEQLRRKAEAIFIDNCKELDRLTSLYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 26 .95 RPM |
SRP009831_brain | 0 .00 RPM | 51 .41 RPM |
SRP009831_dewlap | 0 .13 RPM | 79 .44 RPM |
SRP009831_embryo | 0 .00 RPM | 41 .38 RPM |
SRP009831_heart | 0 .00 RPM | 33 .41 RPM |
SRP009831_liver | 0 .00 RPM | 24 .34 RPM |
SRP009831_lung | 0 .00 RPM | 44 .28 RPM |
SRP009831_ovary | 0 .08 RPM | 88 .30 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 17 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000012468 | 1 retrocopy |
retro_acar_144 ,
|
Homo sapiens | ENSG00000164031 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020687 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013668 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005340 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014956 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016311 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021338 | 1 retrocopy |