RetrogeneDB ID: | retro_acar_155 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343196.1:2006231..2006807(+) | ||
Located in intron of: | ENSACAG00000008935 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RABGGTB | ||
Ensembl ID: | ENSACAG00000011052 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.35 % |
Parental protein coverage: | 56.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YLRMSGVYWGLTVMDLMGQLHRMSKEEILEFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSLQV |
YLR.SGVYWGLTVMDLM.QLHRMSKEEILEFIKSCQHECG.I.ASIGHDPHLLYTLSAVQILTLYDSL.V | |
Retrocopy | YLRLSGVYWGLTVMDLMRQLHRMSKEEILEFIKSCQHECGRINASIGHDPHLLYTLSAVQILTLYDSL*V |
Parental | VDVNKIVEYVKKLQKEDGSFAGDKWGEVDTRFSFCAVATLALLGKLDAIDVDKAVAFVLSCMNFDGGFGC |
VDVNKIVEY.KKLQKEDGSFAGDK.GEVDTRFSFCAVATLALLGKLDAIDVDKAVAFVLSCMNFDGGFGC | |
Retrocopy | VDVNKIVEYKKKLQKEDGSFAGDKLGEVDTRFSFCAVATLALLGKLDAIDVDKAVAFVLSCMNFDGGFGC |
Parental | RPGSESHAGQIYCCTGFLAITGQLHQINADLLGWWLCERQLPSGGLNGRPEK |
RPGSESHAGQIYCCTGFLAITGQLHQINADLLGWWLCERQLPSGGLNGRPEK | |
Retrocopy | RPGSESHAGQIYCCTGFLAITGQLHQINADLLGWWLCERQLPSGGLNGRPEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .03 RPM | 45 .56 RPM |
SRP009831_brain | 0 .00 RPM | 69 .87 RPM |
SRP009831_dewlap | 0 .04 RPM | 117 .07 RPM |
SRP009831_embryo | 0 .18 RPM | 119 .44 RPM |
SRP009831_heart | 0 .00 RPM | 27 .03 RPM |
SRP009831_liver | 0 .00 RPM | 24 .99 RPM |
SRP009831_lung | 0 .15 RPM | 20 .75 RPM |
SRP009831_ovary | 0 .04 RPM | 102 .00 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 20 .91 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000011052 | 1 retrocopy |
retro_acar_155 ,
|
Canis familiaris | ENSCAFG00000020392 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009456 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038975 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007665 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007392 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021824 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014126 | 3 retrocopies |