RetrogeneDB ID:

retro_ttru_1767

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_90906:4728..5307(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RABGGTB
Ensembl ID:ENSTTRG00000014126
Aliases:None
Description:Rab geranylgeranyltransferase, beta subunit [Source:HGNC Symbol;Acc:9796]


Retrocopy-Parental alignment summary:






>retro_ttru_1767
GGAGAAATCGACGCAAGATTGTCTTTTTGTGCGGTGGCAACTTTGGCTCTATTGGGGAAGCTGGATGCTATTAATGTGGA
AAAGGCAATCGAACTTGTTTTATCATGTATGAACTTTGATGGTGGATTTGGTTGCAGGCCAGGTTCTGAATCCCATGCTG
GGCAGATCTATTGTTGCACAGGATTCCTGGCTATTACTAGTCAGTTGCATCGAGTAAATTCTGATTTACTTGGTTGGTGG
CTTTGTGAACGACAGCTTCCATCAGGTGGACTCAATGGAAGGCCAGAGAAGTTACCAGATCTATGCTATTCTTGGTGGGT
GTTGGCTTCCCTAAAGATAATTGGAAGGCTTCATTGGATTGACAGAGAGAAACTGTGCAGTTTCATTTTAGCATGTCAAG
ATGAAGAAACGGGAGGATTTGCGGACAGGCCAGGAGATATGGTAGATCCTTTTCATACTCTATTTGGAATTGCTGGATTG
TCACCTTTGGGAGAAGAACAGATTAAACCTGTTAGCCCTGTGTTTTGCATGCCTGAAGAAATACTTCGGAGAGTGAATGT
TCAGCCTGAACTAGTGAGC

ORF - retro_ttru_1767 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.34 %
Parental protein coverage: 58.18 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLH
GEID.R.SFCAVATLALLGKLDAINVEKAIE.VLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLH
RetrocopyGEIDARLSFCAVATLALLGKLDAINVEKAIELVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLH
ParentalRVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGF
RVNSDLLGWWLCERQLPSGGLNGRPEKLPD.CYSWWVLASLKIIGRLHWIDREKL.SFILACQDEETGGF
RetrocopyRVNSDLLGWWLCERQLPSGGLNGRPEKLPDLCYSWWVLASLKIIGRLHWIDREKLCSFILACQDEETGGF
ParentalADRPGDMVDPFHTLFGIAGLSLLGEEHIKPVSP-FCMPEEILRRVNVQRELVS
ADRPGDMVDPFHTLFGIAGLS.LGEE.IKPVSP.FCMPEEILRRVNVQ.ELVS
RetrocopyADRPGDMVDPFHTLFGIAGLSPLGEEQIKPVSPVFCMPEEILRRVNVQPELVS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1767 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1767 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000110521 retrocopy
Canis familiaris ENSCAFG000000203921 retrocopy
Choloepus hoffmanni ENSCHOG000000094562 retrocopies
Mus musculus ENSMUSG000000389751 retrocopy
Otolemur garnettii ENSOGAG000000076651 retrocopy
Sorex araneus ENSSARG000000073921 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000218241 retrocopy
Tursiops truncatus ENSTTRG00000014126 3 retrocopies
retro_ttru_1391, retro_ttru_1767 , retro_ttru_214,



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