RetrogeneDB ID: | retro_acar_162 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343219.1:804036..804738(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIN | ||
Ensembl ID: | ENSACAG00000004280 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.78 % |
Parental protein coverage: | 65.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EQEKKKKQDLDDEEKTARFIEEQVKRGLEGKEQQEEPVFTELSRESEEEKVVFNLNKGASTSTAAHPK-A |
E....K.Q.LD..EKT..F.EEQV.R..EG.E.QEE.VFTEL.RE.EEEKVV..LNK.A..S..A.P..A | |
Retrocopy | EKKRRKTQGLDYKEKTP*FNEEQVRRRFEG-EEQEELVFTELNRENEEEKVVLSLNKRARKSAVAYPR>A |
Parental | NVLGSSALKAAGTVPTVKRKEPPSNPGQTK-KKKSALDEIMQFEEEKKKSTRTDYWLQPDIVVKIITKKL |
..LGSSALKA.GT.PTV.RKEPP..PGQTK.K.K............KKKS.RTDYWLQPDIVVKI.TKKL | |
Retrocopy | YLLGSSALKAEGTGPTVMRKEPPFSPGQTK<KEKKNQPLTKSHSLKKKKSARTDYWLQPDIVVKITTKKL |
Parental | GEKYHKKKAVIKEVIDKYTAVVKTIDSGDRLKLDQTHLETVIPAPGKRVRVLNGGYRGQEATLQGINEKM |
G.K..K.KAV.KE.IDK.TAVVK.IDS.D.LKLDQ.HLETVIPAPGKRV.VLNGGYRGQ.A.LQGINEK. | |
Retrocopy | GKK*YKRKAVVKETIDKHTAVVKMIDSADKLKLDQIHLETVIPAPGKRVCVLNGGYRGQ-ASLQGINEKS |
Parental | FSATIIIESGPLKGRQVEGIPYEDISKLA |
F.AT.IIES.PLKG.QVE....E.I.KLA | |
Retrocopy | FLAT-IIESRPLKGHQVEDVSCENILKLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .10 RPM | 59 .54 RPM |
SRP009831_brain | 0 .14 RPM | 36 .36 RPM |
SRP009831_dewlap | 0 .00 RPM | 86 .86 RPM |
SRP009831_embryo | 0 .00 RPM | 35 .42 RPM |
SRP009831_heart | 0 .10 RPM | 24 .90 RPM |
SRP009831_liver | 0 .04 RPM | 208 .60 RPM |
SRP009831_lung | 0 .30 RPM | 35 .41 RPM |
SRP009831_ovary | 0 .00 RPM | 74 .28 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 5 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000004280 | 1 retrocopy |
retro_acar_162 ,
|
Cavia porcellus | ENSCPOG00000010515 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000003732 | 2 retrocopies | |
Ficedula albicollis | ENSFALG00000001842 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002261 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026690 | 1 retrocopy | |
Taeniopygia guttata | ENSTGUG00000002119 | 1 retrocopy |