RetrogeneDB ID: | retro_cpor_989 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_38:5133230..5133993(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIN | ||
Ensembl ID: | ENSCPOG00000010515 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.87 % |
Parental protein coverage: | 65.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGKSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCR-DENGFKCHCMSESHQRQLLLASENPQQFMDYFS |
.GKS.FLTPKAIA.RI.SKGLQKLRWYCQMC.KQ.R..ENG.KCHCMSESHQRQLLLASENPQQ.MDYFS | |
Retrocopy | IGKSGFLTPKAIAHRIPSKGLQKLRWYCQMCEKQFR<HENGIKCHCMSESHQRQLLLASENPQQLMDYFS |
Parental | EEFRNDFLELLRRRFGTKRVHNNIVYNEYISH-REHIHMNATQWETLTDFTKWLGREGLCKVDETPKGWY |
EEFR..FLELL.RRFGT.RVH.NIVY..Y.S..R.H.HM.A.QWETL.DFTK.LGR.G.CKVD.TP.... | |
Retrocopy | EEFRSEFLELLKRRFGTRRVHSNIVYSGYVSP<RDHRHMCAAQWETLMDFTKRLGRQGQCKVDQTPRVVH |
Parental | IQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEAPVFTELSRENDEEKVTFNLN |
.QYIDRDPETIR.QLEL.KKKKQDL.DEEKTA..I.EQ..RGL..KEQEAPV..ELSRE..EEKVT...N | |
Retrocopy | -QYIDRDPETIRLQLELGKKKKQDL*DEEKTATLIAEQMPRGLQRKEQEAPVCLELSRESHEEKVTLHVN |
Parental | KGACSSSGATTSKSSSLGPSALKTLGSTASVKRKETSQSSAQSKEKKK |
.G...S.GAT.S.SS.LGPS.L..LG..ASVK.KETSQ..AQ.KE.K. | |
Retrocopy | QGTGVSAGATAS*SSCLGPSTLMMLGRMASVKGKETSQRLAQAKERKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .07 RPM |
SRP017611_liver | 0 .00 RPM | 3 .92 RPM |
SRP040447_lung | 0 .00 RPM | 6 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 2 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000004280 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010515 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000003732 | 2 retrocopies | |
Ficedula albicollis | ENSFALG00000001842 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002261 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026690 | 1 retrocopy | |
Taeniopygia guttata | ENSTGUG00000002119 | 1 retrocopy |