>retro_acar_178
ATGGGGCAGGACTACTACGCCGTGCTGGAACTCACCCAAAGCCCCAAGGACGCCGACATCAAGAAGGCTTATTGGAAACT
AGCATTGAAGTACCCTTATAAGAATGATGCACCTTGGGCTCAGGAGAATTTCAAGCAAATTGCAGAAGTCTATGATGCCT
TGAGCAACCCAGTGAAGAAAGGAGTCTATGATAAATTGGCCTTAAAGGAGGGATTTTTCTGGAGTTTGGGATTAACACTC
CCTGGATAGAAGGCTATGTATTCCATGGAAGGCCAGAGAATGTCTTGCACGATTTCTTTGGAGGAGACAACCCTTTTGCT
GAACTCTACATTGCTGAAGGGGCGGAAGTGAAGATGGCCTTTGGAGGCCTGCAAGGGCAGTGAGTGAAGAAGCAAGACCC
TCCCAGTGAACGAGAACTTTCTCTCTCCCTGGAAGACCTATTCTATGGGTGTACCAAAAAAATCAAGATTTCACGCAGGA
TGATGAATGAAGATGGCCACGTGTCCACCATTAAAGATAAGATCCTCACCATTGATGTCTAGCCAAGGTGGAAGCAAGGG
ACCAGGATCACTTTTCCAGAAGAGGGGGACCAGGGCCCCAATACCATCCCAGCAGACATAATCTTCATTGTCAAAGAGAA
GATCCACCCCCAGTTCAAACAAGACGAGGACAACCTGATTTATGTGATCAAGATCACACTGGGAAAGGCTCTGATTGGGT
GCACCATTGAAATAAGTATGCTGGATGAGCGCCTTCTCAACATCCCCATCAATGACATTGTCCACCCCAAATATTTCAAG
ATTGTGCCGGGAGAAGGGATGCTTCTGTCCCAAGACCCCACCTGCAAAGGGGACCTCTTCATGTACTTTGACATCGTCTT
CCCCGCAAAGCTGACCCCCGCCAAGAAGGACCTCCTGCGGGAACCCCTCCTGACA
ORF - retro_acar_178 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.54 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MGQDYYAMLELTRSAKDADIKKAYRKLALKYHPYKNDAPWAAEKFKQIAEAYDVLSDPLKKGVYDKFAEE |
| MGQDYYA.LELT.S.KDADIKKAY.KLALKY.PYKNDAPWA.E.FKQIAE.YD.LS.P.KKGVYDK.A.. |
Retrocopy | MGQDYYAVLELTQSPKDADIKKAYWKLALKY-PYKNDAPWAQENFKQIAEVYDALSNPVKKGVYDKLA-- |
|
Parental | GLKGG-IPLEFGIDTPWTEGYVFHGRPEKVFRDFFGGDNPFAEFYTAEGAEVNMAFGGLRGRGVKKQDPP |
| .LK.G.I.LEFGI.TPW.EGYVFHGRPE.V..DFFGGDNPFAE.Y.AEGAEV.MAFGGL.G..VKKQDPP |
Retrocopy | -LKEG<IFLEFGINTPWIEGYVFHGRPENVLHDFFGGDNPFAELYIAEGAEVKMAFGGLQGQ*VKKQDPP |
|
Parental | IERDLYLSLEDLFYGCTKKIKISRRVMNEDGHASTIKDKILTIDVQPGWKQGTRITFPEEGDQGPNIIPA |
| .ER.L.LSLEDLFYGCTKKIKISRR.MNEDGH.STIKDKILTIDV.P.WKQGTRITFPEEGDQGPN.IPA |
Retrocopy | SERELSLSLEDLFYGCTKKIKISRRMMNEDGHVSTIKDKILTIDV*PRWKQGTRITFPEEGDQGPNTIPA |
|
Parental | DIIFIVKEKIHPRFKRDEDNLIYVAKIPLGKALIGCTIDVSTLDERLLNIPINDIVHPKYFKVVPGEGMP |
| DIIFIVKEKIHP.FK.DEDNLIYV.KI.LGKALIGCTI..S.LDERLLNIPINDIVHPKYFK.VPGEGM. |
Retrocopy | DIIFIVKEKIHPQFKQDEDNLIYVIKITLGKALIGCTIEISMLDERLLNIPINDIVHPKYFKIVPGEGML |
|
Parental | LSQNPTCKGDLFMYFDIVFPARLTPAKKDLLREALLT |
| LSQ.PTCKGDLFMYFDIVFPA.LTPAKKDLLRE.LLT |
Retrocopy | LSQDPTCKGDLFMYFDIVFPAKLTPAKKDLLREPLLT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .00 RPM |
0 .53 RPM |
SRP009831_brain |
0 .00 RPM |
4 .40 RPM |
SRP009831_dewlap |
0 .00 RPM |
3 .21 RPM |
SRP009831_embryo |
0 .00 RPM |
7 .47 RPM |
SRP009831_heart |
0 .00 RPM |
1 .40 RPM |
SRP009831_liver |
0 .00 RPM |
1 .10 RPM |
SRP009831_lung |
0 .00 RPM |
10 .93 RPM |
SRP009831_ovary |
0 .00 RPM |
6 .64 RPM |
SRP009831_skeletal_muscle |
0 .00 RPM |
0 .25 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_178 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_178 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.