>retro_btau_1139
CTATTCTTTGACTGAACTCAGAAAATTAAGAGCTCCCAAAGAGTGCTGAACGAGGATGGGTACTCCTCTACCATCAGGGA
CGAGATCCTCACGGATGACGTAAAGCCTGGTTGAAGGCAGGGCACGTGTATCACCTTCGAGAAGGAAGAGGACCAGAATC
CCAACATCATCTCAGCTGACATCATCTTATCATAAAGGAGAAACTGCACCCTTGCTTCCACAGGGAGAACGACAACCTCT
TCTTTGTGATCTCCATCTCCTTGAGTAAGGCTCTGACCCACTACTCCATGGAGGTGAAGACCCTAGATGACTGTCTGCTC
AACATCCCTGCCAGTAACATTGTCCACCCCAAGGACTACAAGAAGGTGCCAGGTAAGGGGATGTTGCCAGAGAACCCCAT
GAAGAAGGGGGATGTCTTCATTTTCTGCACCAGCCAGTTCCCTACCTGTCTCACACCCCAGCAGAAAGAGATGCTATGCC
AGTCATTGCTGACC
ORF - retro_btau_1139 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.46 % |
Parental protein coverage: |
52.53 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | LFFGCTKKIKISRRVLNDDGYSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNIIPADIIF-IVKEKL |
| LFF..T.KIK.S.RVLN.DGYSSTI.D.ILT.DVKPG.RQGT.ITFEKE.DQ.PNII.ADII..I.KEKL |
Retrocopy | LFFD*TQKIKSSQRVLNEDGYSSTIRDEILTDDVKPG*RQGTCITFEKEEDQNPNIISADIIL<IIKEKL |
|
Parental | HPRFRRENDNLFFVNSIPLGKALTCCTVEVKTLDDRLLNIPINDIVHPKYFKKVPGEGMPLPEDPTKKGD |
| HP.F.RENDNLFFV.SI.L.KALT....EVKTLDD.LLNIP...IVHPK..KKVPG.GM.LPE.P.KKGD |
Retrocopy | HPCFHRENDNLFFVISISLSKALTHYSMEVKTLDDCLLNIPASNIVHPKDYKKVPGKGM-LPENPMKKGD |
|
Parental | LFIYFDIQFPTRLTPQKKQMLRQALLT |
| .FI....QFPT.LTPQ.K.ML.Q.LLT |
Retrocopy | VFIFCTSQFPTCLTPQQKEMLCQSLLT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
0 .07 RPM |
ERP005899_muscle |
0 .00 RPM |
0 .16 RPM |
SRP017611_brain |
0 .00 RPM |
1 .74 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .41 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
SRP030211_testis |
0 .02 RPM |
78 .13 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1139 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1139 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1139 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
6 retrocopies.