RetrogeneDB ID: | retro_acar_62 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 1:259852776..259853349(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NTAN1 | ||
Ensembl ID: | ENSACAG00000003857 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.25 % |
Parental protein coverage: | 61.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RHTGSGATCLTHCDGSDTEMEVLLMMNAIKMLSSNTECGRLEVHLVGGFNDDRHLSQQLTNQLLKAFKQR |
RHTG.GATC..HCDGSDTEME.L.MMNAIK.LSSNTECGRLEVHL.GGFNDDRHLSQQLTNQLL.AF... | |
Retrocopy | RHTGNGATCPMHCDGSDTEMEELSMMNAIKVLSSNTECGRLEVHLTGGFNDDRHLSQQLTNQLLRAFDNL |
Parental | LDAINLIIIIIITDLNDRQEKGNHFPFLYGIAVNVKTGEVFHATFPDRGPAEDLRSASILTGAKMVNIYD |
...I.L......TDLNDRQEKGN.F.F.YGI.VNVKTGEVFH.TFPDRG..EDLRSASILTGAKMVNIYD | |
Retrocopy | QNSIHLVTFCV-TDLNDRQEKGNNFLFIYGITVNVKTGEVFHTTFPDRGSVEDLRSASILTGAKMVNIYD |
Parental | SRKEELRIGPYFWMPFPHVDFWLQQDDEHILQNLSTSPLAEPPHFVSHIRAT |
SRKEEL.I.PYFWMPFPHVD.WLQQD..HILQ.LS.SP.AEPPHFVSHIRAT | |
Retrocopy | SRKEELSIEPYFWMPFPHVDIWLQQDN*HILQILSISPVAEPPHFVSHIRAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 11 .42 RPM |
SRP009831_brain | 0 .09 RPM | 14 .39 RPM |
SRP009831_dewlap | 0 .08 RPM | 32 .82 RPM |
SRP009831_embryo | 0 .03 RPM | 33 .58 RPM |
SRP009831_heart | 0 .10 RPM | 20 .18 RPM |
SRP009831_liver | 0 .00 RPM | 14 .44 RPM |
SRP009831_lung | 0 .00 RPM | 22 .21 RPM |
SRP009831_ovary | 0 .35 RPM | 33 .74 RPM |
SRP009831_skeletal_muscle | 0 .04 RPM | 14 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000003857 | 1 retrocopy |
retro_acar_62 ,
|
Choloepus hoffmanni | ENSCHOG00000011818 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016017 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000014054 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014995 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003455 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014327 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002538 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002982 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014096 | 2 retrocopies |