RetrogeneDB ID: | retro_chof_2046 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_46583:553..988(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NTAN1 | ||
Ensembl ID: | ENSCHOG00000011818 | ||
Aliases: | None | ||
Description: | N-terminal asparagine amidase [Source:HGNC Symbol;Acc:29909] |
Percent Identity: | 87.92 % |
Parental protein coverage: | 51.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | ERARLLRGQSVQQVGPQG-LLYV-QQRELAVTSP-KDGSISILGSDDATTCHIVVLRHTGNGATCLTHCD |
ERARLLRG..VQQVGPQG.LLYV.QQRELAVTSP.KDGSISILGSDDATTCHIVVLRHTGNGAT.LTHCD | |
Retrocopy | ERARLLRGPTVQQVGPQG<LLYV<QQRELAVTSP>KDGSISILGSDDATTCHIVVLRHTGNGATYLTHCD |
Parental | GTDTKAEVPLIMNSIKSFSNHTQCGRLEVHLVGGFSDDRQLSQK-LTHQLLSEFDRQEDDIHLVTLCVTE |
.TDT.AEVPLI.NS.KSFSNHTQCGRL.VHL.GGFSDDRQL.QK.LTHQ.LSEFDRQE.DIHLVTLCVTE | |
Retrocopy | ETDTRAEVPLIVNSMKSFSNHTQCGRLKVHLMGGFSDDRQLAQK>LTHQILSEFDRQEHDIHLVTLCVTE |
Parental | LNDREENEK |
L.D.EENEK | |
Retrocopy | LKDQEENEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000003857 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011818 | 3 retrocopies |
retro_chof_1148, retro_chof_1591, retro_chof_2046 ,
|
Dasypus novemcinctus | ENSDNOG00000016017 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000014054 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014995 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003455 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014327 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002538 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002982 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014096 | 2 retrocopies |