>retro_acar_84
GACCCCATACAGCCCCCTTGACGGGGACAGGGGTCCCATGAACTGAGGAGGAAAAAAAATAACGTGGATGGATTATTACT
GGACATGCTGGCGATCATTTGGACACTCGTTGGCAATAATCAGGAACCTCCTTATTCCATGATGACTTTGCATGAAATGG
CTGAAATAGATGAAGGCTGGCTGGAAGTTGTCCAATCATTAATTAGAGTTATTCCATTAGAAGATCCCCTGGGTCTAGCT
GTTATAACATTACTACTTGATGAGTGTCCATTGCCAATAAAAGATGCATTCCAGAAGTTGACTGAAATATTAAATATAAG
GAGAGCCGTTGCGCACCAGGATGTGTGCCATTCTGCCAAACATTTGAACACCACCGCCATCCTGGGCTGTTTGGCAGAGA
AGCTTGCAGGTCCTGCAAGTGTAGGTTTACTCAGTCAAGGAATCTTGGAATACTTGCTGCAGAGCTTGGAGTTCCAGTCC
CACCCAACAGTAATGCTTTTTGTACTAACAGCCCTGGAAAAGTTTGCACAAACAAGTGAAAATAAAGTGACTGTTTCCCA
GACTTGCATCAGCGACCAACTTGTCTTGTTAGAGAAAGAGATGGATAATCTGGACTACTTAACGCACCAAGTTGGTTTCT
GCACTCAGTGGAGTTTAGGTAATCTGTTTTGAAATATGGCAGGCAGTTTACGTTCAAGGAGGTTGGCTTGACCCACATTA
ATGCCATGCTGAATAGTAACAACATCAGTGAATACCTTCAGATCTCATTGCATGGGTTGAATGTCTGATGCGATGCCTCC
TCTTTTGAAAGCGTCTGGTGTACCTACTGTGTGGATTTTGGAGTCTGATATTATGAAGTCACCATCATCACTTCTGGAGT
GATTTAGATCAGATGGGCTACCAAAGACGGCAATTAT
ORF - retro_acar_84 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.46 % |
Parental protein coverage: |
52.85 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | DPVRPPRRGRGPHEPRRKKHNVDGLVLDTLAVIRTLVDNDQEPPYSMMTLHEMAETDEGWLEVVQSLIRV |
| DP..PP.RG.G.HE.RRKK.NVDGL.LD.LA.I.TLV.N.QEPPYSMMTLHEMAE.DEGWLEVVQSLIRV |
Retrocopy | DPIQPP*RGQGSHELRRKKNNVDGLLLDMLAIIWTLVGNNQEPPYSMMTLHEMAEIDEGWLEVVQSLIRV |
|
Parental | IPLEDPLGPAVITLLLDECPLPTKDALQKLTEILNLSGAVARQDACHPAKHRNTTAVLGCLAEKLAGPAS |
| IPLEDPLG.AVITLLLDECPLP.KDA.QKLTEILN...AVA.QD.CH.AKH.NTTA.LGCLAEKLAGPAS |
Retrocopy | IPLEDPLGLAVITLLLDECPLPIKDAFQKLTEILNIRRAVAHQDVCHSAKHLNTTAILGCLAEKLAGPAS |
|
Parental | IGLLSEGILEYLLQSLEFQSHPTVMLFALIALEKFAQTSENKVTVSQTCISDQLVLLEKWMDNPDYLKRQ |
| .GLLS.GILEYLLQSLEFQSHPTVMLF.L.ALEKFAQTSENKVTVSQTCISDQLVLLEK.MDN.DYL..Q |
Retrocopy | VGLLSQGILEYLLQSLEFQSHPTVMLFVLTALEKFAQTSENKVTVSQTCISDQLVLLEKEMDNLDYLTHQ |
|
Parental | VGFCAQWSLDNLF-LKEGRQFTYEKVDLTHINAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVD |
| VGFC.QWSL.NLF.LK.GRQFT...V.LTHINAMLNSN..SEYL.IS.HGL...CDASSFESV.CT.CVD |
Retrocopy | VGFCTQWSLGNLF<LKYGRQFTFKEVGLTHINAMLNSNNISEYLQISLHGLNV*CDASSFESVWCTYCVD |
|
Parental | SGVWYYEVTVVTSGVMQIGWATKDSKF |
| .GV.YYEVT..TSGV..I.WATKD... |
Retrocopy | FGV*YYEVTIITSGVI*IRWATKDGNY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .00 RPM |
24 .71 RPM |
SRP009831_brain |
0 .14 RPM |
9 .42 RPM |
SRP009831_dewlap |
0 .00 RPM |
37 .42 RPM |
SRP009831_embryo |
0 .03 RPM |
23 .62 RPM |
SRP009831_heart |
0 .00 RPM |
13 .23 RPM |
SRP009831_liver |
0 .00 RPM |
16 .77 RPM |
SRP009831_lung |
0 .00 RPM |
22 .62 RPM |
SRP009831_ovary |
0 .00 RPM |
49 .30 RPM |
SRP009831_skeletal_muscle |
0 .00 RPM |
7 .65 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_84 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_84 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.