>retro_acar_95
TCCAATCCAAGAGGACAATGCAACCAGATATTGGCATCTCACCTTGACATGCCTGAGATCATCCATGGTAATGGCATCAT
TGTGGGCACAGTCATTACATTTGAGTGTTCTGCAGAACACCAACTGGTTGGACAGGGAGTCGTCACATGAATTTGGGAAG
GCAATAGCACCCAGCAGACAGCAGATATCCCTTCATGTAAATCTATATCCAAATATGAAACCTTTGGATTTAAAGTTACA
ATGATTGCCTCCATTGTGAACTGTGCAATTATTCTGCTGATGTCTATAGCTTTTTTAACCTGCTGTTTCATGTGTTAAGA
AAAGTGAGAAAAGGAGAAAGAGCTCAAAGGGATATGGAACTGTGGTACCAGCTTAAAAGTGAAGAACTGGAAAGCATGCA
AGCAGCTTATTTTGGTTATAAAGGAAGAAATAACAACAATAAACATATCAAGCATAAGGCAGCATTTGATGGTGGCTGTC
ATATGGCATATGATAACCAAGGCTTCTGCAGCTTCCATGAAGAATGCAGGAACTGAGTGTTATGGAGAAAATTATTTACA
AAGGAATTCAGCCAAAACCAT
ORF - retro_acar_95 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.08 % |
Parental protein coverage: |
70.91 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | SNYTGQCNQIFAPHLGMSEIIHGNGTTVGTVITFRCSAEHQLVGQGVVTCIWKGNSTQWTADIPSCKPIS |
| SN..GQCNQI.A.HL.M.EIIHGNG..VGTVITF.CSAEHQLVGQGVVT.IW.GNSTQ.TADIPSCK.IS |
Retrocopy | SNPRGQCNQILASHLDMPEIIHGNGIIVGTVITFECSAEHQLVGQGVVT*IWEGNSTQQTADIPSCKSIS |
|
Parental | KYETFGFKIAVIASIVSCAIILLMSMAFLTCCLIKCVKK-SERRRAQR-DMQLWYQLRSEELESMQAAYF |
| KYETFGFK...IASIV.CAIILLMS.AFLTCC...C..K...RR.....DM.LWYQL.SEELESMQAAYF |
Retrocopy | KYETFGFKVTMIASIVNCAIILLMSIAFLTCCFM-C*EK>EKRRKSSK>DMELWYQLKSEELESMQAAYF |
|
Parental | GYKGRNNNNNKNIKNKAAFDRGSHMAYDNQGFCSFHEECNGDITGTECYGENYLQRN |
| GYKGR.NNNNK.IK.KAAFD.G.HMAYDNQGFCSFHEEC...............Q.. |
Retrocopy | GYKGR-NNNNKHIKHKAAFDGGCHMAYDNQGFCSFHEECRN*VLWRKLFTKEFSQNH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .00 RPM |
60 .26 RPM |
SRP009831_brain |
0 .05 RPM |
3 .98 RPM |
SRP009831_dewlap |
0 .04 RPM |
36 .07 RPM |
SRP009831_embryo |
0 .00 RPM |
3 .47 RPM |
SRP009831_heart |
0 .00 RPM |
4 .20 RPM |
SRP009831_liver |
0 .00 RPM |
9 .45 RPM |
SRP009831_lung |
0 .00 RPM |
2 .17 RPM |
SRP009831_ovary |
0 .00 RPM |
27 .37 RPM |
SRP009831_skeletal_muscle |
0 .00 RPM |
0 .47 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_95 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_95 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.