RetrogeneDB ID: | retro_amel_1294 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193161.1:692252..692711(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSRP1 | ||
Ensembl ID: | ENSAMEG00000012114 | ||
Aliases: | None | ||
Description: | cysteine and glycine-rich protein 1 [Source:HGNC Symbol;Acc:2469] |
Percent Identity: | 53.8 % |
Parental protein coverage: | 79.79 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | GGGKKCGVCQ-KTVYFAEEVQCEGSSFHK-SCFLCMVCKKNLDSTTVAVHGEEIY-CKSCYGKKYGPKGY |
G.G..CGVC....V...E.VQ..G.S.H...CFLCM.C..NLD...V..H.EEIY.CKS.YGKK.G.KGY | |
Retrocopy | GAGNNCGVCG<SAVNLVEKVQGPGRSVHR>CCFLCMDCRTNLDGIVVVMHDEEIY>CKSYYGKKDGLKGY |
Parental | GYGQGAGTLSTDKGESL-GIRHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWH |
...QG.G.L..D..E.L.G......P.H...TNPN.S.FAQK..G.E..P.....VYAAEK.IGAG...H | |
Retrocopy | CCSQGTGALNMDGEERL<GHQTQVQP-HMIMTNPNTS*FAQKCRGTEKYPTYGDSVYAAEKIIGAG*P*H |
Parental | KSCFRCAKCGKGLESTTL |
K.CF..AKCGK.LE.TTL | |
Retrocopy | KNCFLSAKCGKDLEPTTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012114 | 1 retrocopy |
retro_amel_1294 ,
|
Echinops telfairi | ENSETEG00000017067 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020772 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026421 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001836 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008991 | 1 retrocopy | |
Drosophila melanogaster | FBgn0259209 | 1 retrocopy |