RetrogeneDB ID: | retro_amel_346 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192394.1:393520..393841(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMIM19 | ||
Ensembl ID: | ENSAMEG00000005067 | ||
Aliases: | None | ||
Description: | small integral membrane protein 19 [Source:HGNC Symbol;Acc:25166] |
Percent Identity: | 63.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MPGAYGVMGDDGSMDYSVHEAWNEATNVYLVVILVSFVLFVYAKRNKRKIMRIFSVPPTAETLSEPSFYD |
.PG..GVMG..GS..Y....A.NEATN...V.IL.SF.L....KRNK.KIMR.FSVPPTA.T.SEP.F.D | |
Retrocopy | LPGV*GVMGTNGSINYGLKKA*NEATNFCWVGILDSFGLLMCIKRNKKKIMRVFSVPPTAVTSSEPNFHD |
Parental | TISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE |
.ISKI.LR.QLEM.SISRK.DYQQP.NQA....L.LE | |
Retrocopy | AISKIHLR*QLEMNSISRKSDYQQP*NQANNMRLLLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005067 | 1 retrocopy |
retro_amel_346 ,
|
Cavia porcellus | ENSCPOG00000002665 | 1 retrocopy | |
Felis catus | ENSFCAG00000031243 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014829 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008851 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008608 | 1 retrocopy |