RetrogeneDB ID: retro_sara_28

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_222413:16690..16993(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSSARG00000011025
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSARG00000008851
• Aliases: None
• Description: None

Sequence

>retro_sara_28
ATGGCAGACGATGGTTCTGTGGATTACAGCGTACATGAGGCCTGGCATGAAGCCACCAATGTTTATTTGGTGGTGATCCT
TGTTAGCTTTGCTCTCTTCATGTATGCCAAGAGGAATACAAGGAAAATCATGAGGATATTCAGTGTGCCATCTTCAGCAG
AAACCTTGTCAGAGCCTAACTTTTATGACACAATGAGCAAAATTCGCTTAAGACAGCACCTGGAGGTGTATTCTGTTTCA
AGAAAGCATGACTATCAGCAACCCCGAAACCAAGCGGACAGTGTACAGCTCTCACGGGAATGA

Alignment

ORF - retro_sara_28 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MADDGSMDYSVHEAWNEATNVYLVVILVSFALFMYAKRNKRKIMRIFSVPSSAETLSEPNFYDTMSKIRL
          MADDGS.DYSVHEAW.EATNVYLVVILVSFALFMYAKRN.RKIMRIFSVPSSAETLSEPNFYDTMSKIRL
Retrocopy MADDGSVDYSVHEAWHEATNVYLVVILVSFALFMYAKRNTRKIMRIFSVPSSAETLSEPNFYDTMSKIRL

Parental  RQQLEMYSISRKHDYQQPQNQADSVQLSLE
          RQ.LE.YS.SRKHDYQQP.NQADSVQLS.E
Retrocopy RQHLEVYSVSRKHDYQQPRNQADSVQLSRE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_28 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005067	1 retrocopy	retro_amel_346,
Cavia porcellus	ENSCPOG00000002665	1 retrocopy	retro_cpor_1019,
Felis catus	ENSFCAG00000031243	1 retrocopy	retro_fcat_1312,
Pteropus vampyrus	ENSPVAG00000014829	1 retrocopy	retro_pvam_282,
Sorex araneus	ENSSARG00000008851	2 retrocopies	retro_sara_28 , retro_sara_510,
Tupaia belangeri	ENSTBEG00000008608	1 retrocopy	retro_tbel_2485,