RetrogeneDB ID: | retro_amel_636 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192540.1:864226..864740(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000017318 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.63 % |
Parental protein coverage: | 98.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AAELTLLEKSLG-LSKGNKYSAQGERQFKIPVLQTNNGPSLTGLTTIAAHLVKQANKEHLLGSTAEEKAI |
A.ELTLLEKSLG.LSK.NK.SA.GERQ..IPVLQ.NNGPSL.GLTT.AAHLVKQANKEHLLGSTAEEKAI | |
Retrocopy | ATELTLLEKSLG>LSKENKHSADGERQ--IPVLQANNGPSLPGLTTVAAHLVKQANKEHLLGSTAEEKAI |
Parental | VQQWLEYRVTRVDGHSNKDDIRTLLKDLNSYLEDKVYLTGYNFTLADILLYYGLHRFIVDLTVQEKEKYL |
VQQWLEY.VT.VDGH..KDDI.TLLKDLNSYLEDKVYLTGYNFTLADILLYY.LH.F.VDLTVQEKE.YL | |
Retrocopy | VQQWLEYKVT*VDGHFSKDDIHTLLKDLNSYLEDKVYLTGYNFTLADILLYYRLHCFRVDLTVQEKEEYL |
Parental | NVSRWFCHIQHYPGIRQHLSVVVFIKNRLYTNSH |
NVSRW.CHI.HYPGI..HLS.VVFIKNRL.TNSH | |
Retrocopy | NVSRWSCHIEHYPGIGRHLSIVVFIKNRLCTNSH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017318 | 1 retrocopy |
retro_amel_636 ,
|
Dasypus novemcinctus | ENSDNOG00000019203 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006156 | 1 retrocopy | |
Felis catus | ENSFCAG00000011622 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008960 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000012636 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007715 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000588 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012305 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016390 | 5 retrocopies |