RetrogeneDB ID: | retro_eeur_87 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_5440:5069..5426(-) | ||
Located in intron of: | ENSEEUG00000005157 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000006156 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.92 % |
Parental protein coverage: | 92.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LERWLGLRGGRKYGAQGERQVPVLQTNNGLSLTGLTTIAAYLVKQANKEYLLGNTAEEKAIVQQWLEYRV |
LERWLGL.GG.KYGAQGERQVPVLQTNNGLSLTGLTTIAAYLVK.ANKE.LLGNTAEEKAIVQQWLEYRV | |
Retrocopy | LERWLGL*GGCKYGAQGERQVPVLQTNNGLSLTGLTTIAAYLVKKANKE*LLGNTAEEKAIVQQWLEYRV |
Parental | TRIDGPCGKEEVRILLKDLNSYLEDKVYLTGYNFTLADVLLYYGLHRFI |
.R.DGPCGKEEV..LLKDLNSYL.DKVYLTGYNFTL.DVLLYY.LH.FI | |
Retrocopy | IRVDGPCGKEEVHTLLKDLNSYLDDKVYLTGYNFTLEDVLLYYWLHHFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 8 .06 RPM |
SRP017611_kidney | 0 .19 RPM | 9 .56 RPM |
SRP017611_liver | 0 .00 RPM | 3 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017318 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019203 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006156 | 1 retrocopy |
retro_eeur_87 ,
|
Felis catus | ENSFCAG00000011622 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008960 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000012636 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007715 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000588 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012305 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016390 | 5 retrocopies |