RetrogeneDB ID: | retro_amel_906 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192732.1:979337..979787(-) | ||
Located in intron of: | ENSAMEG00000010316 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MCFD2 | ||
Ensembl ID: | ENSAMEG00000006097 | ||
Aliases: | None | ||
Description: | multiple coagulation factor deficiency 2 [Source:HGNC Symbol;Acc:18451] |
Percent Identity: | 86.18 % |
Parental protein coverage: | 89.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VPATMRSLWLLRTPFLCGLLWAFCAPGARAEEPGASFSHPGSVGLDKNTVHDQEHIMEHLEGVINKPEAE |
VP.T.RSL.LLR.PF.CGLLWAFCAPGARAEEPGASFSHPG.VGLD.NTVHDQEHIMEHL.G.I..PEA. | |
Retrocopy | VPRTRRSLRLLRSPFPCGLLWAFCAPGARAEEPGASFSHPGGVGLDTNTVHDQEHIMEHLQGAIKIPEAQ |
Parental | MSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGNEQAPPMSEAELIN-LIDGVLRDDDKNNDGY |
MSPQELQLHYFKMHDYDGNNLLDGLELST.ITHVHKEEGNEQAPP.S.AELIN.LIDGVLR.DDKNNDGY | |
Retrocopy | MSPQELQLHYFKMHDYDGNNLLDGLELSTDITHVHKEEGNEQAPPRSAAELIN<LIDGVLRADDKNNDGY |
Parental | IDYAE-FAKSLQ |
..YAE.FA.SLQ | |
Retrocopy | RAYAE>FAHSLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006097 | 2 retrocopies |
retro_amel_720, retro_amel_906 ,
|
Canis familiaris | ENSCAFG00000032480 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003286 | 6 retrocopies | |
Felis catus | ENSFCAG00000009220 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010002 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012043 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021325 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003692 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010692 | 1 retrocopy |