RetrogeneDB ID: | retro_amel_912 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192737.1:1086554..1087387(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNW1 | ||
Ensembl ID: | ENSAMEG00000003976 | ||
Aliases: | None | ||
Description: | SNW domain containing 1 [Source:HGNC Symbol;Acc:16696] |
Percent Identity: | 81.72 % |
Parental protein coverage: | 51.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | QVDAEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEVMNADDPDRQRPDEEAIKEITEKTRVALEKSVSQK |
QVDAEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEVMNADD..RQRPDEEAIKEITEK..V.LEK..SQK | |
Retrocopy | QVDAEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEVMNADDLERQRPDEEAIKEITEKKMVTLEKTTSQK |
Parental | VAAAMPVRAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAP |
VAAAM.VRAA.KLAPAQYI..TPSQ.G.AFNSGAKQRV..MVEMQKDP.EPP.FKINKKIPR.PPSPP.P | |
Retrocopy | VAAAMTVRAAEKLAPAQYI*HTPSQ*GMAFNSGAKQRVTWMVEMQKDPVEPPSFKINKKIPREPPSPPTP |
Parental | VMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKA |
.MHSPS.K.TVKEQQEWK.PPCIS.WK.AK.YTI.LD..LAA.GRGLQ.VHIN.NFAK.AEALYIA...A | |
Retrocopy | DMHSPSQKRTVKEQQEWKFPPCISDWKHAKYYTIQLDICLAAHGRGLQRVHINKNFAKQAEALYIAYWVA |
Parental | REAVEMRAQVERKMAQKEKEKHEEKLREM-AQKARERRAGIKTHVEKEDGEARERDEIRHDRRKERQHD |
.EAVE...QVER.M.QKEKEKHEEKLREM.AQKARERR.GIKTHV.KED.EA.E.DEI.HDR.KERQH. | |
Retrocopy | CEAVEIWVQVERNMVQKEKEKHEEKLREM<AQKARERRVGIKTHVGKEDREAHEKDEIQHDR*KERQHN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |