RetrogeneDB ID: | retro_atha_15 | ||
Retrocopylocation | Organism: | Mouse-ear cress (Arabidopsis thaliana) | |
Coordinates: | 2:12157945..12158500(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | AT2G28420 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | AT1G80160 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.23 % |
Parental protein coverage: | 83.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DETGNPLHIKSLNHISLLCRSVEESISFYQNVLGFLPIRRPDSFDFDGAWLFGHGIGIHLLQSPEPEKLL |
DE.........LNH.S.LC..V..S..FY..VLGF..I.RP.SFDFDGAWLF..G.GIHL.Q.....KL. | |
Retrocopy | DELNSKPPLMALNHVSRLCKDVKKSLEFYTKVLGFVEIERPASFDFDGAWLFNYGVGIHLVQAKDQDKLP |
Parental | KKTE-INPKDNHISFQCESMEAVEKKLKEMEIEYV-RAVVEEGGIQVDQLFFHDPDAFMIEICNCDSLPV |
..T....P.DNHISFQCE.MEA.EK.LKE....Y..R.V..E.....DQLFF.DPD.FM.EICNC..L.. | |
Retrocopy | SDTDHLDPMDNHISFQCEDMEALEKRLKEVKVKYIKRTVGDEKDAAIDQLFFNDPDGFMVEICNCENLEL |
Parental | IP |
.P | |
Retrocopy | VP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Arabidopsis thaliana | AT1G80160 | 1 retrocopy |
retro_atha_15 ,
|
Brassica oleracea | Bo2g096220 | 1 retrocopy | |
Brassica rapa | Bra008491 | 1 retrocopy | |
Arabidopsis lyrata | fgenesh1_pm.C_scaffold_2001978 | 1 retrocopy | |
Medicago truncatula | MTR_2g103490 | 1 retrocopy | |
Setaria italica | Si023259m.g | 1 retrocopy |