RetrogeneDB ID: | retro_sita_39 | ||
Retrocopylocation | Organism: | Foxtail millet (Setaria italica) | |
Coordinates: | 2:47244532..47245141(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Si032185m.g | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Si023259m.g | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.97 % |
Parental protein coverage: | 65.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LPLASLNHISIVCRSVEESLSFYTDVLGFVPIRRPGSFDFDGAWLFNYGIGIHLLQSEDPGSLPE---KR |
.PL..LNHIS..C.SV..S..FY...LGFV.I.RP...DF.GAWLFNYG.GIHL.Q..D....P...... | |
Retrocopy | MPLMALNHISRLCKSVDDSVRFYVKALGFVLIHRPPALDFSGAWLFNYGVGIHLVQRDDARRAPDVSPAG |
Parental | EINPKDNHISFQCESMAAVERRLKEMGIPYVQRCV-EEGGINVDQIFFHDPDGFMIEICNCDNLPVIP |
E..P.DNHISFQCE.M...ERRL.EM.I.Y..R...EE.G...DQ.FF.DPDGFMIEICNC.NL...P | |
Retrocopy | ELDPMDNHISFQCEDMGMMERRLREMRIRYMKRTINEEEGSPIDQLFFKDPDGFMIEICNCENLELVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Arabidopsis thaliana | AT1G80160 | 1 retrocopy | |
Brassica oleracea | Bo2g096220 | 1 retrocopy | |
Brassica rapa | Bra008491 | 1 retrocopy | |
Arabidopsis lyrata | fgenesh1_pm.C_scaffold_2001978 | 1 retrocopy | |
Medicago truncatula | MTR_2g103490 | 1 retrocopy | |
Setaria italica | Si023259m.g | 1 retrocopy |
retro_sita_39 ,
|