>retro_bdis_18
ATGGCGGTCGGCGTCGGCGTCCTCTCCGGGAGCTCCGGCGGCGGCAACGGGAGGGTCACCGCCTTCGTGGTGCTCTCGTG
CATCACCGCGGGCATGGGCGGCGTCATCTTCGGCTACGACATCGGGATCGCAGGCGGCGTGTCGTCGATGGAGCCGTTCC
TGAAAAAGTTCTTCCCGGAGGTGTACCGGCGGATGAAGGGCGACGGTAGCATCAGCAACTACTGCAAGTTCGACAGCCAG
CTGCTGACTGCCTTCACTTCCTCGCTCTACGTCGCCGGCCTCCTCACCACTTTCCTCGCGTCCACGGTCACAGCCCGGCG
CGGCCGCCGCCCGTCCATGCTCCTGGGCGGCGCCAGCTTCCTCGCGGGCTCGGCCGTGGGCGCCGCGGCCGTGGACATCT
ACATGGTCATCCTCGGCCGGGTGCTCCTCGGGGTCGGCCTGGGCTTCGCGAACCTGGCCGTGCCGCTGTACCTGTCGGAG
ATGGCGCCGTCGCGGCACCGCGGCGCGTTCAGCAACGGCTTCCAGCTGAGCGTCGGGGTCGGCGCGCTCGCGGCCAATTT
GATCAACTTCAGCACGCAGAAGATCAGGGGCGGGTGGGGGTGGCGCGTGTCGCTGGCACTCGCCGCCGTCCCCGCTGCGC
TTCTGCTCGTCGGCGCCATCTTCCTCCCGGAGACGCCCAACAGCCTGATCCAGCAAGGCAGAGACCGTCAGGACGTGGCC
GTGCTGCTGCGGAAGATCCGCGGCACGGATGACGTGGACGCCGAGCTGGACGACATCGTGGCCGCCGCGGCAGCTAACAG
CGAAGGGGCAGCCGGAAGTGGCCTGCGGATGCTGCTCACTCAGCGTAAATACCGGCCTCAGCTGGCGATGGCCGTGATGA
TACCCTTCTTCCAGCAGGTGACGGGGATCAACGCGATCGCGTTCTACGCGCCGGTGCTGCTGCGCAGCATCGGCATGGGC
GAGTCGGCGTCGCTGCTGTCGGCGGTCGTCACGGGCGTCGTCGGCGCGGGCTCCACCTTCCTCTCCATGTTCCTCGTCGA
CCGGTTCGGGCGCCGCACGCTCTTCCTGGCGGGGGGCGCGCAGATGCTGGCGTCGCAGGTGCTCATCGGCGGCATCATGG
CCGCGAAGCTCGGGGACGACGGAGGGGTGAGCAAGGCGTGGGCCGGGGTGCTCGTGCTGCTCATCGCCGTCTACGTGGCC
GGGTTCGGGTGGTCGTGGGGCCCGCTGGGGTGGCTCGTGCCCAGCGAGATCTTCCCGCTGGAGGTGCGCTCGGCGGGGCA
AGGGGTGACGGTGGCCGTGAGCTTCGTGTTCACGGTGGTCGTGGCGCAGGCGTTCCTGGCCATGCTGTGCCACATGAGGG
CCGGGATATTCTTCTTCTTCGCGGCGTGGCTGGCGGCCATGACGGCGTTCGTGTACCTCCTCCTGCCGGAGACGAAAGGG
GTGCCGATGGAGCAGATGGCTGCCTTGTGGGCCGAGCACTGGTTCTGGAAGCGGGTCCTCCTGGGCTCCGAGGAGGCGCC
AACAGCGAGCGGGAAACTCTGA
ORF - retro_bdis_18 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.72 % |
Parental protein coverage: |
92.7 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | AAAAAGYNGRVTSFVVLSCIVAGSGGILFGYDLGISGGVTSMESFLKKFFPEVYHQMKGDKVDVSNYCRF |
| .....G.NGRVT.FVVLSCI.AG.GG..FGYD.GI.GGV.SME.FLKKFFPEVY..MKGD....SNYC.F |
Retrocopy | SGSSGGGNGRVTAFVVLSCITAGMGGVIFGYDIGIAGGVSSMEPFLKKFFPEVYRRMKGDG-SISNYCKF |
|
Parental | DSELLTVFTSSLYVAGLVATLFASSVTTRYGRRASILIGGSVFIAGSVFGGAAVNVYMLLLNRILLGIGL |
| DS.LLT.FTSSLYVAGL..T..AS.VT.R.GRR.S.L.GG..F.AGS..G.AAV..YM..L.R.LLG.GL |
Retrocopy | DSQLLTAFTSSLYVAGLLTTFLASTVTARRGRRPSMLLGGASFLAGSAVGAAAVDIYMVILGRVLLGVGL |
|
Parental | GFTNQSIPLYLSEMAPPQYRGAINNGFELCISIGILIANLINYGVAKIEGGWGWRISLSMAAVPAAFLTV |
| GF.N...PLYLSEMAP...RGA..NGF.L....G.L.ANLIN....KI.GGWGWR.SL..AAVPAA.L.V |
Retrocopy | GFANLAVPLYLSEMAPSRHRGAFSNGFQLSVGVGALAANLINFSTQKIRGGWGWRVSLALAAVPAALLLV |
|
Parental | GAIFLPETPSFLIQRGGGNTDAAKAMLQRLRGTAGVQKELDDLVAAAGA---GQQGRPLRTLLGKKKYRP |
| GAIFLPETP..LIQ.G....D.A...L...RGT..V..ELDD.VAAA.A...G..G..LR.LL...KYRP |
Retrocopy | GAIFLPETPNSLIQQGRDRQDVA-VLLRKIRGTDDVDAELDDIVAAAAANSEGAAGSGLRMLLTQRKYRP |
|
Parental | QLAMAILIPFFNQVTGINVINFYAPVMFRTIGLKESASLMSAVVTRLCATAANVVAMVVVDRSGRRKLLL |
| QLAMA..IPFF.QVTGIN.I.FYAPV..R.IG..ESASL.SAVVT...........M..VDR.GRR.L.L |
Retrocopy | QLAMAVMIPFFQQVTGINAIAFYAPVLLRSIGMGESASLLSAVVTGVVGAGSTFLSMFLVDRFGRRTLFL |
|
Parental | AGGVQMILSQFAVGAILAAKFKDHGAMDKEYAYLVLVIMCVFVAGFAWSWGPLTYLVPTEICPLEIRSAG |
| AGG.QM..SQ...G.I.AAK..D.G...K..A........V.VAGF.WSWGPL..LVP.EI.PLE.RSAG |
Retrocopy | AGGAQMLASQVLIGGIMAAKLGDDGGVSKAWAGVLVLLIAVYVAGFGWSWGPLGWLVPSEIFPLEVRSAG |
|
Parental | QSVVIAVIFLATFVIGQTFLAMLCHLRSGTFFLFGGWVCLMTLFVFFFLPETKQLPMEQMEQVWRRHWFW |
| Q.V..AV.F..T.V..Q.FLAMLCH.R.G.FF.F..W...MT.FV...LPETK..PMEQM...W..HWFW |
Retrocopy | QGVTVAVSFVFTVVVAQAFLAMLCHMRAGIFFFFAAWLAAMTAFVYLLLPETKGVPMEQMAALWAEHWFW |
|
Parental | RRV-VGTEE |
| .RV..G.EE |
Retrocopy | KRVLLGSEE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brachypodium distachyon was not studied using RNA-Seq expression data.
Brachypodium distachyon was not studied using ChIP-Seq data.
Brachypodium distachyon was not studied using EST data.
Brachypodium distachyon was not studied using FANTOM5 data.
retro_bdis_18 was not experimentally validated.
Retrocopy orthology:
Brachypodium distachyon does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.