Parental gene: | BRADI1G24820 |
| Aliases: | None |
| Description: | None |
| Organism: | Purple false brome (Brachypodium distachyon) |
| Coordinates: | 1:20067438..20070041(+) |
>BRADI1G24820
ATGGCCGGCGGCGCGGTGGTGAACACCGGAGGGGGGAAGGACTACCCCGGGAAGCTCACCATGTTCGTGCTCTTCGCCTG
CATCGTCGCTGCCACCGGCGGCCTCATCTTCGGATATGACATCGGCATCTCTGGTGGCGTGACGTCGATGAACCCGTTCC
TGATGAAGTTCTTCCCGGCGGTGTACCGGCAGGAGCAGGAGGCGGAGCGGAACCAGAGCAACCAGTACTGCAAGTTCGAC
AGCCAGCTGCTCACCATGTTCACCTCCTCGCTCTACCTGGCGGCGCTCGTCGCCTCCTTCTTCGCCGCCACCGTCACTCG
CGTCGCCGGCCGAAAGTGGTCCATGTTCGCCGGCGGCGTCACCTTCCTCGCCGGCGCCGCCCTCAACGGTGCCGCCAAGG
ACGTCCTCATGCTCATCCTCGGACGCGTCCTCCTCGGCATCGGCGTCGGCTTCGCTAACCAGTCGGTGCCGGTGTACCTG
TCGGAGATGGCGCCGGCGCGGCTGCGAGGGATGCTCAACATCGGGTTCCAGCAGATGATCACGATCGGCATCCTGTGCGC
GAACCTGATCAACTACGGCACGGCCAAGATCAAGGGAGGGTGGGGCTGGCGCGTGAGCCTGGCCCTGGCCGCGGTGCCGG
CCGCCATCATCGCCGTGGGCGCGCTCTTCCTCCCCGACACGCCCAACTCCCTCATCGACCGCGGATACACCGACGACGCC
AAGCGCATGCTCCGGCGCGTGCGCGGCACGGACGACGTGGACGAAGAATACCGCGACCTGGTGGCCGCGTCCGAGGAGTC
CAAGCTCGTGAGCCACCCGTGGCGCAACATCCTGCAGCGCCGCTACCGCCCGCAGCTCACCTTCGCAATCGCCATCCCTT
TCTTCCAGCAGCTGACCGGCATCAACGTCATCATGTTCTACGCGCCCGTGCTCTTCAAGACGCTGGGCTTCGCCGACGAC
GCCTCCCTCATGTCCGCCGTCATCACGGGCCTCGTCAACGTCTTCGCCACTTCCGTGTCCATCGTGACCGTGGACCGGCT
CGGGCGCCGGAAGCTGTTCCTCCAGGGCGGGGTCCAGATGCTGGTTTGCCAGATCGTGGTGGGCGGGCTGATCGGGGCGA
AATTCGGGTTCAGCGGCGTGGCCGTGATCCCCAAGGAGTACGCGGCGTTCGTGGTGCTCTTCATCTGCGCCTACGTGGCC
GGGTTCGCCTGGTCCTGGGGCCCGCTCGGGTGGCTCGTCCCCAGCGAGATCTTCCCGCTGGAGATCAGGTCGGCCGGGCA
GAGCATCACCGTGTCCGTCAACATGTTCTGCACGTTCGTCATCGCGCAGGCGTTCCTCCCCATGCTCTGCCGGTTCAAGT
TCATGCTCTTCTTCTTCTTCGGCGCGTGGGTGGTGCTCATGACGCTCTTCGTGGCATTCTTCCTGCCGGAGACCAAGAAC
GTGCCCATCGAGGAGATGGTGCTCGTCTGGAAGGCGCACTGGTACTGGGGCCGCTTCATCCGGGACGAGGACGTGCACGT
CGGCGCCGACGTCGAGATGCCGGCATCCGGCAAGAACAAGATCCAGCCAGGCAACGGCAAGCTCGGCATCTAG
ATGGCCGGCGGCGCGGTGGTGAACACCGGAGGGGGGAAGGACTACCCCGGGAAGCTCACCATGTTCGTGCTCTTCGCCTG
CATCGTCGCTGCCACCGGCGGCCTCATCTTCGGATATGACATCGGCATCTCTGGTGGCGTGACGTCGATGAACCCGTTCC
TGATGAAGTTCTTCCCGGCGGTGTACCGGCAGGAGCAGGAGGCGGAGCGGAACCAGAGCAACCAGTACTGCAAGTTCGAC
AGCCAGCTGCTCACCATGTTCACCTCCTCGCTCTACCTGGCGGCGCTCGTCGCCTCCTTCTTCGCCGCCACCGTCACTCG
CGTCGCCGGCCGAAAGTGGTCCATGTTCGCCGGCGGCGTCACCTTCCTCGCCGGCGCCGCCCTCAACGGTGCCGCCAAGG
ACGTCCTCATGCTCATCCTCGGACGCGTCCTCCTCGGCATCGGCGTCGGCTTCGCTAACCAGTCGGTGCCGGTGTACCTG
TCGGAGATGGCGCCGGCGCGGCTGCGAGGGATGCTCAACATCGGGTTCCAGCAGATGATCACGATCGGCATCCTGTGCGC
GAACCTGATCAACTACGGCACGGCCAAGATCAAGGGAGGGTGGGGCTGGCGCGTGAGCCTGGCCCTGGCCGCGGTGCCGG
CCGCCATCATCGCCGTGGGCGCGCTCTTCCTCCCCGACACGCCCAACTCCCTCATCGACCGCGGATACACCGACGACGCC
AAGCGCATGCTCCGGCGCGTGCGCGGCACGGACGACGTGGACGAAGAATACCGCGACCTGGTGGCCGCGTCCGAGGAGTC
CAAGCTCGTGAGCCACCCGTGGCGCAACATCCTGCAGCGCCGCTACCGCCCGCAGCTCACCTTCGCAATCGCCATCCCTT
TCTTCCAGCAGCTGACCGGCATCAACGTCATCATGTTCTACGCGCCCGTGCTCTTCAAGACGCTGGGCTTCGCCGACGAC
GCCTCCCTCATGTCCGCCGTCATCACGGGCCTCGTCAACGTCTTCGCCACTTCCGTGTCCATCGTGACCGTGGACCGGCT
CGGGCGCCGGAAGCTGTTCCTCCAGGGCGGGGTCCAGATGCTGGTTTGCCAGATCGTGGTGGGCGGGCTGATCGGGGCGA
AATTCGGGTTCAGCGGCGTGGCCGTGATCCCCAAGGAGTACGCGGCGTTCGTGGTGCTCTTCATCTGCGCCTACGTGGCC
GGGTTCGCCTGGTCCTGGGGCCCGCTCGGGTGGCTCGTCCCCAGCGAGATCTTCCCGCTGGAGATCAGGTCGGCCGGGCA
GAGCATCACCGTGTCCGTCAACATGTTCTGCACGTTCGTCATCGCGCAGGCGTTCCTCCCCATGCTCTGCCGGTTCAAGT
TCATGCTCTTCTTCTTCTTCGGCGCGTGGGTGGTGCTCATGACGCTCTTCGTGGCATTCTTCCTGCCGGAGACCAAGAAC
GTGCCCATCGAGGAGATGGTGCTCGTCTGGAAGGCGCACTGGTACTGGGGCCGCTTCATCCGGGACGAGGACGTGCACGT
CGGCGCCGACGTCGAGATGCCGGCATCCGGCAAGAACAAGATCCAGCCAGGCAACGGCAAGCTCGGCATCTAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Brachypodium distachyon | BRADI1G78400 | within_species_paralog | 1 retrogene | |
| Hordeum vulgare | MLOC_55525 | ortholog_one2one | 1 retrogene | |
| Medicago truncatula | MTR_0009s0370 | ortholog_many2many | 1 retrogene | |
| Oryza glumaepatula | OGLUM07G18360 | ortholog_one2one | 1 retrogene | |
| Oryza meridionalis | OMERI07G15470 | ortholog_one2one | 2 retrogenes | |
| Oryza nivara | ONIVA07G16940 | ortholog_one2one | 1 retrogene | |
| Oryza punctata | OPUNC07G17520 | ortholog_one2one | 1 retrogene | |
| Oryza glaberrima | ORGLA07G0149800 | ortholog_one2one | 1 retrogene | |
| Oryza rufipogon | ORUFI07G19310 | ortholog_one2one | 1 retrogene | |
| Oryza sativa japonica | OS07G0559700 | ortholog_one2one | 1 retrogene | |
| Triticum aestivum | Traes_2BS_7DF366FE1 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_bdis_38 | 72.00 | 94.34 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all BRADI1G24820 retrocopies