RetrogeneDB ID: | retro_bdis_21 | ||
Retrocopylocation | Organism: | Purple false brome (Brachypodium distachyon) | |
Coordinates: | 1:32887243..32887714(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | BRADI1G37080 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | BRADI2G06560 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.9 % |
Parental protein coverage: | 96.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GPITQDWEPVVVRKKLPNAAAKKDEKAVNAARRAGADIDIVKKHNAGTNK-AAHSGTSLNTKKLDDDTEN |
G.I.QDWEPVV.R...P.AA..K..KAVN.A.R.GA....V.K..AGTNK.A........T.KLD..TE. | |
Retrocopy | GNISQDWEPVVLRRTKPKAADLKSTKAVNQALRSGAPVETVRKAAAGTNKKASATAAATPTRKLDEMTEP |
Parental | LAHERVPSDLKKSIMQARMDKKLTQAQLAQVINEKPQVIQEYESGKAIPNQQIIAKLERALGTKLRGK |
.A..RV.......I..AR..K...QA.LA..INE..QV.QEYESGKA.P.Q...AK.ERAL..KLRGK | |
Retrocopy | AALDRVAGEVRAAIQKARVAKGWSQAELAKRINERAQVVQEYESGKAAPVQAVLAKMERALEVKLRGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brachypodium distachyon | BRADI2G06560 | 1 retrocopy |
retro_bdis_21 ,
|
Medicago truncatula | MTR_2g084220 | 1 retrocopy | |
Populus trichocarpa | POPTR_0001s40090 | 1 retrocopy | |
Physcomitrella patens | PP1S96_94V6 | 1 retrocopy | |
Prunus persica | PRUPE_ppa013074mg | 1 retrocopy | |
Arabidopsis lyrata | scaffold_503053.1 | 1 retrocopy | |
Solanum lycopersicum | Solyc10g007350.2 | 1 retrocopy | |
Theobroma cacao | TCM_001730 | 1 retrocopy | |
Triticum aestivum | Traes_3AS_719D37CCA | 1 retrocopy | |
Vitis vinifera | VIT_12s0028g02020 | 1 retrocopy |