RetrogeneDB ID: | retro_tcac_24 | ||
Retrocopylocation | Organism: | Cacao (Theobroma cacao) | |
Coordinates: | 9:5960780..5961077(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | TCM_037910 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | TCM_001730 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 50.55 % |
Parental protein coverage: | 64.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GPISQDWEPVVIRKKAPNAAAKRDEKAVNAARRAGAEVETVKKATAGTNKAASSSTTLNTRKLDDETENL |
G...QDWEPVV..K..P.A...RD.KAVN.A.R.G..V.T.KK..AG.NK.......LN.RKLD..TE.. | |
Retrocopy | GAVTQDWEPVVLHKSKPKAQELRDPKAVNQALRSGPPVQTIKKFDAGSNK-KTEGPVLNPRKLDEGTEPA |
Parental | AHDRISSDLKKNIMQARMDKK |
A.DR.S.D....I..AR..KK | |
Retrocopy | AIDRVSADVRQAIQKARLEKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brachypodium distachyon | BRADI2G06560 | 1 retrocopy | |
Medicago truncatula | MTR_2g084220 | 1 retrocopy | |
Oryza brachyantha | OB08G20790 | 1 retrocopy | |
Oryza barthii | OBART08G12410 | 1 retrocopy | |
Oryza glumaepatula | OGLUM08G13370 | 1 retrocopy | |
Oryza meridionalis | OMERI08G10430 | 1 retrocopy | |
Oryza nivara | ONIVA08G13070 | 1 retrocopy | |
Oryza punctata | OPUNC08G11340 | 1 retrocopy | |
Oryza glaberrima | ORGLA08G0109300 | 1 retrocopy | |
Oryza rufipogon | ORUFI08G14100 | 1 retrocopy | |
Oryza sativa japonica | OS08G0366100 | 1 retrocopy | |
Physcomitrella patens | PP1S96_94V6 | 1 retrocopy | |
Prunus persica | PRUPE_ppa013074mg | 1 retrocopy | |
Sorghum bicolor | Sb07g014940 | 1 retrocopy | |
Arabidopsis lyrata | scaffold_503053.1 | 1 retrocopy | |
Theobroma cacao | TCM_001730 | 1 retrocopy |
retro_tcac_24 ,
|
Triticum aestivum | Traes_3AS_719D37CCA | 1 retrocopy |