>retro_bole_11
ATGGCGGCAGGAGGAGTTGAAATCTCGAAAGGCTCTGTCGTCGTTGATCGTGTTCGTGATTTTTATCCTCGTCAGGGTGG
TAGGGACGGTGAGAGGCGTCAAACCAAACGACCCAGTGATTCTGATCGCTGGTTGAAAGATGGGCGACGTGATTTGTATC
AAAGAGGAGAAGCCCGAGAGGGAGATGTTGGTCAGAGACACCCTGAGAAGAGGAGGAAGCGTTCTCCAGTTTCACCTGCA
CTTGCTGAGAAGACCATTGTTGATGTGGGTTCTGCTAGGAAGATTTCATCTGAGGATCATGCCGGTGTTCTGAAGTCAAC
AGAGTATGTTTCTGCAGTGTCTGTGACGCCTGTTAAACATCCTTTTGATGATCTTGAGGAGGGCCAGTTGGAGGCCGAGC
AGGTGGTTCAGGCACCCAATATTGCTACGTCTAAGTGGTGTTTGGAATCTCCAAAGGATGAGGCAGTTCATGTTGTCAGG
AATAGCAGATGGAATAGGAGCAGCCTTACTCCTGAGAGCGGTGAATTTCAAGTGGATTCGTCTGATGAACATCGGTCCAA
TTCTTCTGGATCTCGCAGCTTAGAACCCATCAGTGCTCATGAGGATTCAGAGCATGAGTTGGAGGGTCGTATTGACATGG
ATGTTGGTGAAGAAGAATGTTGTGCTTCTGATTTTAACGACTCGGAAGTTGATGAACCAGAGGGAGGCCTGAGCATGCTA
TCTGGCAGTAGAGATGTTAACGAATACCAGAAGCTAAGCAAGATAAATGAAGGAACTTATGGTGTTGTCTACAAAGCCAA
GGACAGAAAGACGGAAGAGATTGTGGCACTTAAAATGATCAAGATGAACATGGAAGACGAATATGGATTCCCATTGACAT
CTTTGAGGGAGATCAACATTCTTTTGTCTTGCAATCACCCGTCGATTGTGAACGTCAAGGAAGTCGTGGTGGGAAACGGT
GACAGTGTTTTCATGGTCATGGAACACTTGGAACACGACTTGAGGGGCGTTATGGACAGGATGAAACAGCCTTTTAGCAC
CAGTGAGGTCAAATGCTTGATGATTCAGCTGTTGGAGGGTTTGAAGTACCTACATAGCAACTGGATCATCCACAGGGATC
TGAAGCCATCTAATCTTCTACTGAACAACAGTGGGGAGCTGAAAATATGCGATTTTGGAATGGCTAGGCAATATGGGAGT
CCTATCAAGCCCTACACGCAGTTGGTTGTCACACAGTGGTACAGGTCCCCGGAGCTTCTTCTAGGAACAAAGGAGTATTC
AACCGCAGTTGATATGTGGTCCATCGGGTGCATTATGGGTGAGTTGCTGTCTCTAAAACCTCTTTTCCGAGGGAAAAGTC
AGAATGACATTGACCAGCTTCAACAGATATTTGCGGTTCTTGGAACACCGAGTGAGACAACTTGGCCTGGATTCACTGCG
CTGCCAGGTTCCAAAGCCAAGTTTCGTAAGCAGCCATACAATTTACTGCGTAAGAAATTTCCTGCTGCATCTTTTACCGG
AGGTCCAGTTCTTTCAGAATTGGGATTTGATTTGTTGAACAGATTATTGAATGTTGACCCTGAGAAGCGACTAACAGTTG
ACGAGGCTCTTAACCACTCCTGGTTCAGTGAAGTACCTCTCCAGAAATCCAAGGAGTTCATGCCTACATTTCCTTCAAAG
CGTAACTGA
ORF - retro_bole_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.23 % |
Parental protein coverage: |
68.14 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EYSDNEYFSSDHDELEAEEPASPAQGGMNMLLGSRSVNGFQKLNKINEGTYGIVYRARDEKTKEIVALKK |
| .....E...SD....E..EP.....GG..ML.GSR.VN..QKL.KINEGTYG.VY.A.D.KT.EIVALK. |
Retrocopy | DVGEEECCASDFNDSEVDEP----EGGLSMLSGSRDVNEYQKLSKINEGTYGVVYKAKDRKTEEIVALKM |
|
Parental | IKMKEDKYEEEYGFPLTSLREINILLSCNHPSIVNVKEVVVGGRNDSDVYMVMEHLEHDLKGLMERKKQP |
| IKM.....E.EYGFPLTSLREINILLSCNHPSIVNVKEVVVG..N...V.MVMEHLEHDL.G.M.R.KQP |
Retrocopy | IKMN---MEDEYGFPLTSLREINILLSCNHPSIVNVKEVVVG--NGDSVFMVMEHLEHDLRGVMDRMKQP |
|
Parental | FSTSEVKCLMLQLLEGVHYLHTNWIIHRDLKPSNLLMNNSGELKICDFGMARQYGSPIKPYTQMVITQWY |
| FSTSEVKCLM.QLLEG..YLH.NWIIHRDLKPSNLL.NNSGELKICDFGMARQYGSPIKPYTQ.V.TQWY |
Retrocopy | FSTSEVKCLMIQLLEGLKYLHSNWIIHRDLKPSNLLLNNSGELKICDFGMARQYGSPIKPYTQLVVTQWY |
|
Parental | RPPELLLGAKQYSTAVDMWSIGCIMAELLSQKPLFPGKT--ELDQLQKIFAVLGTPTESIWPGFSSLPNA |
| R.PELLLG.K.YSTAVDMWSIGCIM.ELLS.KPLF.GK.....DQLQ.IFAVLGTP.E..WPGF..LP.. |
Retrocopy | RSPELLLGTKEYSTAVDMWSIGCIMGELLSLKPLFRGKSQNDIDQLQQIFAVLGTPSETTWPGFTALPGS |
|
Parental | KAKFPTQSYNLLRKKFPAISFVGGQILSERGFDLLNGLLTLDPEKRLTVEEALNHSWFHEVPLPKSQDFM |
| KAKF..Q.YNLLRKKFPA.SF.GG..LSE.GFDLLN.LL..DPEKRLTV.EALNHSWF.EVPL.KS..FM |
Retrocopy | KAKFRKQPYNLLRKKFPAASFTGGPVLSELGFDLLNRLLNVDPEKRLTVDEALNHSWFSEVPLQKSKEFM |
|
Parental | PTFPPRR |
| PTFP..R |
Retrocopy | PTFPSKR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_11 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.