>retro_brap_13
ATGGCGGCAGGGGGAGTTGAAATCTCGAAAAGCTCTGTCGTCGTTGATCGTGTTCGTGATTTGTATCCTCGTCAGGGTGG
TAGGGACGGTGAGAGGCGTCAAACCAAACGACCCAGTGATTCTGATCGCTGGTTGAAAGATGGGCGACGTGATTTGTATC
AAAGAGGAGAAGCCCGAGAGGGAGATGTTGGTCAGAAGAGGAGGAAGTGTTCTCCAGTTTCAGGGGAGAGAAAAGATCAA
GTCTTTCCACCTCCACTTGGTGAGAAGACCATTGTTGATGTGGGTAAGATTTCATCTGAGGGTGTTGTGAAGTCAACAGA
GTATGTTTCTGCAGTGTCAGTGACGTCTGTTAAACATCCTTTTGATGATCTTGAGGAGGGCCAGTTGGAGGACGAGCAGG
TGGTTCAGGCACCCAATATTGCTACGTCTAAGTGGTGTTTGGAATCTCCAAAGGATGAGGCAGTTCATGTTGTCAGGAAT
AGCAGATGGAATAGGAGCAGTCTTACTCCTGAGAGCGGTGAATTTCAAGTGGATTCGTCTGATGAACGTCGGTCCAATTC
TTCTGAGTCTCGCAGCTTAGAACCCCTCAGCTCTCATGAAAATTCAGAGCATGAGATTAACATGGATGTTGGTGAAGAAG
AATGTTGTGCTTCTGATTTGAACGACTCGGAAGTTGATGAAGCAGAGGGAGGCTTGAGCATGCTATCTGGTAGTAGAGAT
GTTAACGAATACCAGAAGCTAAGCAAGATTAACGAAGGAACTTATGGTGTTGTCTACAAAGCCAAGGACAGAAAGACAGA
GGAGATTGTGGCACTTAAAATGATCAAGATGAACATGGAAGACGAATATGGATTCCCGTTGACATCTTTGAGGGAGATCA
ACATTCTTTTGTCTTGCAATCACCCGTCGATTGTGAACGTCAAGGAAGTCGTGGTGGGAAACGGTGACAGTGTTTTCATG
GTCATGGAACACTTGGAACATGACTTGAGGGGCGTTATGGACAGGATGAAACAGCCTTTTAGCACCAGTGAGGTCAAATG
CTTGATGATTCAGCTGTTGGAGGGTTTGAAGTACCTACATAGCAACTGGATCATCCACAGGGATCTGAAGCCATCTAATC
TTCTACTGAACAACAGTGGGGAGCTGAAAATATGCGATTTTGGAATGGCTAGGCAATATGGGAGTCCTATCAAGCCCTAC
ACGCAGTTGGTTGTCACACAGTGGTACAGGTCCCCGGAGCTTCTTCTAGGAACAAAGGAGTATTCAACCGCAGTTGATAT
GTGGTCCATCGGTTGCATTATGGGTGAGTTGCTGTCTCTAAAACCTCTTTTCCGAGGGAAAAGTCAGAATGACATTGACC
AGCTTCAACAGATATTTGCGGTTCTTGGAACACCGAGTGAGACGACTTGGCCTGGATTCACTTCGCTGCCAGGTTCCAAA
GCCAAGTTTCGTAAGCAGCCATACAATTTACTGCGTAAGAAATTTCCTGCTGCATCTTTTACCGGAGGTCCAGTTCTTTC
AGAATTGGGATTTGATTTGTTGAACAGATTATTGAATGTTGACCCTGAGAAGCGACTAACAGTTGACGAGGCTCTTAACC
ACGCCTGGTTCAATGAAGTACCTCTCCAGAAATCCAAGGAGTTCATGCCTACATTTCCTTCAAAGCGTAACTGA
ORF - retro_brap_13 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.27 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MNMLLGSRSVNGFQKLNKINEGTYGIVYRARDEKTKEIVALKKIKMKEDKYEEEYGFPLTSLREINILLS |
| ..ML.GSR.VN..QKL.KINEGTYG.VY.A.D.KT.EIVALK.IKM.....E.EYGFPLTSLREINILLS |
Retrocopy | LSMLSGSRDVNEYQKLSKINEGTYGVVYKAKDRKTEEIVALKMIKMN---MEDEYGFPLTSLREINILLS |
|
Parental | CNHPSIVNVKEVVVGGKNDSDVYMVMEHLEHDLKCLMERKKQPFSTSEVKCLMLQLLEGVHYLHTNWIIH |
| CNHPSIVNVKEVVVG..N...V.MVMEHLEHDL...M.R.KQPFSTSEVKCLM.QLLEG..YLH.NWIIH |
Retrocopy | CNHPSIVNVKEVVVG--NGDSVFMVMEHLEHDLRGVMDRMKQPFSTSEVKCLMIQLLEGLKYLHSNWIIH |
|
Parental | RDLKPSNLLMNNSGELKICDFGMARQYGSPIKPYTQMVITQWYRPPELLLGAKQYSTAVDMWSIGCIMAE |
| RDLKPSNLL.NNSGELKICDFGMARQYGSPIKPYTQ.V.TQWYR.PELLLG.K.YSTAVDMWSIGCIM.E |
Retrocopy | RDLKPSNLLLNNSGELKICDFGMARQYGSPIKPYTQLVVTQWYRSPELLLGTKEYSTAVDMWSIGCIMGE |
|
Parental | LLSQKPLFPGKT--ELDQLQKIFAVLGTPNESIWPGFSSLPNAKAKFPTQSYNLLRKKFPAISFVGGQIL |
| LLS.KPLF.GK.....DQLQ.IFAVLGTP.E..WPGF.SLP..KAKF..Q.YNLLRKKFPA.SF.GG..L |
Retrocopy | LLSLKPLFRGKSQNDIDQLQQIFAVLGTPSETTWPGFTSLPGSKAKFRKQPYNLLRKKFPAASFTGGPVL |
|
Parental | SERGFDLLNGLLTLDPEKRLTVEEALNHSWFHEVPLPKAQDFMPTFPPRR |
| SE.GFDLLN.LL..DPEKRLTV.EALNH.WF.EVPL.K...FMPTFP..R |
Retrocopy | SELGFDLLNRLLNVDPEKRLTVDEALNHAWFNEVPLQKSKEFMPTFPSKR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica rapa was not studied using RNA-Seq expression data.
Brassica rapa was not studied using ChIP-Seq data.
Brassica rapa was not studied using EST data.
Brassica rapa was not studied using FANTOM5 data.
retro_brap_13 was not experimentally validated.
Retrocopy orthology:
Brassica rapa does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.