RetrogeneDB ID:

retro_bole_39

Retrocopy
location
Organism:Brassica oleracea
Coordinates:C1:23022864..23023080(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Bo1g024160
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_bole_39
AGGTTCACATCAGGGGGAGTAGTGCGTGTTGTACTCTTTTTCCTTCATCATGGTTTTGTCCCACTGGGTTTTCCTGATAA
GCTTTTAATGAGGCAACATGAAGCGTATTACAGATCCTGTATGGTTATGGCATCCAAGGGGGAGTGTTATAAATCATGGA
GTGGATTGTCATTAACCAAGACAAGAGAAGAAAGCCCGTCAGCCACATCAAGCCCA

ORF - retro_bole_39 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.7 %
Parental protein coverage: 58.54 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRSTSGGVVRVVLFFLHHGFVPLGFPDKLADVVKHFSAKYGKDFVSAAVG--LQSDSGVSRLLVDKLSVKA
R.TSGGVVRVVLFFLHHGFVPLGFPDKL........A.Y....V.A..G....S.SG.S.......S..A
RetrocopyRFTSGGVVRVVLFFLHHGFVPLGFPDKL--LMRQHEAYYRSCMVMASKGECYKSWSGLSLTKTREESPSA
ParentalPDGP
...P
RetrocopyTSSP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_39 was not experimentally validated.

Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Brassica oleracea Bo1g024160 3 retrocopies
retro_bole_39 , retro_bole_65, retro_bole_69,



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