>retro_bole_62
GGTACTTGCGAGATGCTTAATGTTCCACAAATAGCTCGCTTGTTTGTTGACAAGATCAGAGAAGAACCAGAGTATTTCAT
GCCCATGAAGATTGAGCAGCTAGTAATGGAGAAATGGAAGATCAGTGTTAGTAAGCCGCAATGCCAACATGCTAGGAACA
AGGCCCTTAGATGGATTGAAAGAGAGTACGATGAGCAGTTTGGACGGCTGAGGGATTACTGCTCTGAGATAAGAAGCTCG
AATGTTAATTCTTCTGTTGAGCTTGATTGCCTGAAAAATGATGATGGGATAGACGTTTTCAACAGATTTTATGTCTGTTT
TGACATTCTGAGGAGAAACTGGAAAGAAACGTGTAGGCCACTAATTGGAGTAGATGGTTGTTTCTTGAAGTCTAGGATGA
AAGGGCAGCTGCTAATGGCTTTGGGTCGTGATGGCAATAACGCCATTTACTGTATCGCATGGGTTGTGGTACAAGTAGAG
AACAAAGTCAATTTGTTGTGGTTTGTGGAAAAGATCAAGGTTGATCTAGGACTAGACAAAGGAGATGGTTATGTTATGGT
TTTTGATAGTCAAAAGGGATTGATTGCAGTTGTGAAGAGAGAACTGCCGCGAATTGAGCGTAGAATGTGTGTTAGACACA
TCTACGGTAACTTAAAAAAGAACCATGGGAAGAAACCTGAAATGAAAAAACTGATTTGGAACCTTGCTTGGAGCTACAAT
GACGCTGATTACAAAGAAAATCTTTTAGAGATTGAGCGATATGATCAAGATGTTTATGACGACGTTTTGAAGACAAAGCC
AGAGAAGTGGTGTAGGGAATTCCACAAGCTTGGACCTTACTGTGAAGACGTCGAGAACAATTCCACTGAATCTTTCAACA
ACTCCAAAGCCCGAGACAAGCCCTTTGTGCCTATGTTGGAGACAATAGCTTGCTTGGCGATGGTTCGTATAGCGAAAAGG
GATGTTATTTGTACCAGCCACAAAGGGATTTGCACACCGTATGTCACTGAGATGCTCGAGACTTTGCATGAGAAAGCCTC
TTTATGCATGGTTAGACCATCTATCAACCAGACGTTTGGAGCTACTACTAATGGCTGTCAACATAGGGTGAGCTTGGAAA
ATAGAACTTGTAGTTGCAGGAGATGGGAGATTACAGGGATTCCTTGTGAACACGCCTATGGAGTTATGTTGTCGAAAGGT
TTAAAGGCTCAAGACTATGTTGTTCACTGGTTTCAGACAAGTACGTGGAAGCGTACATATGCTGTAGGGATTGTGCCATT
GCGTGGAGCAAATTTCTGGCCTGTAGGACTGGAACCATCTATAATTGAACCTGAGATCTCAGATCAACCAGGCTGTAAGA
AGGTGACTAAAGCGGATAAAAAGAGAAAGAGAGGAGTCAATGAATCACCATCGAAGAAAAAAGAGAAGTTCTTGAAGCGG
ATCATGCACTGTGGGATA
ORF - retro_bole_62 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
63.52 % |
Parental protein coverage: |
76.25 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GECSMLKVPQIARLFVDKIREEPDYYMPMKIEQLVLEKWGITVSRAQCQAARTKALKWIEFEYDHQFARL |
| G.C.ML.VPQIARLFVDKIREEP.Y.MPMKIEQLV.EKW.I.VS..QCQ.AR.KAL.WIE.EYD.QF.RL |
Retrocopy | GTCEMLNVPQIARLFVDKIREEPEYFMPMKIEQLVMEKWKISVSKPQCQHARNKALRWIEREYDEQFGRL |
|
Parental | RDYAAEILESNKDSTVVIETLKNTYGKDEFNRFYICFDNIRRTWKETCRPLLGVDGCFVKHKIKGQVLVA |
| RDY..EI..SN..S.V....LKN..G.D.FNRFY.CFD..RR.WKETCRPL.GVDGCF.K...KGQ.L.A |
Retrocopy | RDYCSEIRSSNVNSSVELDCLKNDDGIDVFNRFYVCFDILRRNWKETCRPLIGVDGCFLKSRMKGQLLMA |
|
Parental | LGRDADNAIYPVAWGVVQVENTDNWLWFVRMIREDLGLDDGDGFVIVSDRQKGLIAAVKEELPKVEHRKC |
| LGRD..NAIY..AW.VVQVEN..N.LWFV..I..DLGLD.GDG.V.V.D.QKGLIA.VK.ELP..E.R.C |
Retrocopy | LGRDGNNAIYCIAWVVVQVENKVNLLWFVEKIKVDLGLDKGDGYVMVFDSQKGLIAVVKRELPRIERRMC |
|
Parental | VRHIYENLKKKHGSKSDMKSYLWSLAWSYNEAEYKERLDRILNYDVGVYDDVMKTNPKSWCRAYHRLGPY |
| VRHIY.NLKK.HG.K..MK...W.LAWSYN.A.YKE.L..I..YD..VYDDV.KT.P..WCR..H.LGPY |
Retrocopy | VRHIYGNLKKNHGKKPEMKKLIWNLAWSYNDADYKENLLEIERYDQDVYDDVLKTKPEKWCREFHKLGPY |
|
Parental | CEDVENNSTESFNNTIGKARELPFVPMFETIRRLAMARIAKRSAISHAHKGICTPYATEFLKVEKKKATE |
| CEDVENNSTESFNN...KAR..PFVPM.ETI..LAM.RIAKR..I...HKGICTPY.TE.L.....KA.. |
Retrocopy | CEDVENNSTESFNNS--KARDKPFVPMLETIACLAMVRIAKRDVICTSHKGICTPYVTEMLETLHEKASL |
|
Parental | CTITRSTNGMYEAKLGGCTHRVSSDRWTCTCMKFEICGIPCEHAYGVILHKKLKAEDFVCKWFRTSMWRR |
| C....S.N....A...GC.HRVS....TC.C...EI.GIPCEHAYGV.L.K.LKA.D.V..WF.TS.W.R |
Retrocopy | CMVRPSINQTFGATTNGCQHRVSLENRTCSCRRWEITGIPCEHAYGVMLSKGLKAQDYVVHWFQTSTWKR |
|
Parental | NYTDCLIPVRGARFWPQTSAPDVHIPPDPDQPGRKKLPKAEKKRKKPANESPTKKQPKHKKRIMHCEV |
| .Y.....P.RGA.FWP....P....P...DQPG.KK..KA.KKRK...NESP.KK..K..KRIMHC.. |
Retrocopy | TYAVGIVPLRGANFWPVGLEPSIIEPEISDQPGCKKVTKADKKRKRGVNESPSKKKEKFLKRIMHCGI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_62 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
4 retrocopies.