>retro_bole_63
AAGCTGTTTGTTGACAAGATCAGAGAAGAGCCAGAGTATTTCATGCCCATGAAGATTGAGGAGCTGGTTATGGAGAAGTG
GAAGCTCAGTGTTAGTAGGCCGCAATGCCAACATGCTAGGAACAAAGCGCTCAGATGGATTGAAAGAGAGTATGATGAGC
AGTTTGGACGGTTGAGGGACTACTGCGCTGAGATAAGAAGCTCGAATGTTAATTCTTCTGTTGAGCTTGACTGCCTGAGA
AATGATGATGGGATCGAAGTTTTCAACAGATTTTATGTCTGTTTTGACATTCTGAGGAGAACCTGGAAAGAAACGTTCAG
GCCACTAATTGGAGTAGATGATTGTTTCTTGAAGTCTAGGATGAAAGGAAAGCTTCTCGTGGCTTTGGGTCGTGATGCCG
ATAACGCCATTTACCCTATCGCATGGGCTGTGGTACAAGTAGAAAACAACAACAATTGGTTGTGGTTTGTGAGAAAGATC
AAGGTTGATCTAGGACTAGATGAAGGAGAGGGTTATGTTATGGTTTCAGATCGTCAAAAGGGATTGATTGCAGCTGTGAA
GAGAGCACTATCGCGAATTGAGCATAGGATGTGTGTCAGACACATCTATGGCAACTTGAAGAAACTCCATGGGAAGAAAC
CTGAAATGAAGCTAAAGCTTTGGAACCTTGCTTGGAGCTACAATGATGCTGATTACAAAGCAAATCTCAAATACTTTGAG
AGGTATGATCAAGATGTTTATGACTACGTGATGAAGGCAAAGCCAGGGAAGTGGTGTAGGGAATTCTACAAGCTTGGAAC
TTTTTGTGAAGACGTGGAGAATAGCTCAACTGAATCTTTCAACAACTCCATAGGTAAAGCCCGAGACAAGCCTTTTGTAC
CTATGTTTGAGACAATAGCTCGCTTGGCGATGGTTCGTATAGCGAGAAGAGATGTCATCTGCAGCAGCCACGAAGGGATT
TGCACACCGTATGTCATTGAGATGCTCGAGAGTTTGCATGAGAAAGCCTCGAAATGCATGGTTCAACCTTCCACCAACCA
GACATATGAATCTACTAGTAATGACTGTGTGCATAGGGTGAGCTTGGAAAATAAAACATGTAGCTGCAGAAGATGGGAGA
TTACAGGGATCCCTTGTGAGCACGCCTATGGAGTTATGCTGAAGAAAGGTTTAGAGGCTCAAGACTTTGTGGTTCACTGG
TTTAGGATAGCTACGTGGAGGCGTACGTATGCTGAAGGGATTGTACCTTTGCGTGGAGCAAAGTTCTAGCCCGTAGGACC
GGAACCATCTATAATTGAACCTGAGATCCCAGATCAACCAGACCATAAGAAGGAGACTAAAGCAGATAAAAAGAGAGAGA
AAGGAGTCAATGAATCACCATCGAAGAAAAAAAGAGAAGTTCTTGAAGGGGATAATGCACTGTGGGATA
ORF - retro_bole_63 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
62.05 % |
Parental protein coverage: |
74.38 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | RLFVDKIREEPDYYMPMKIEQLVLEKWGITVSRAQCQAARTKALKWIEFEYDHQFARLRDYAAEILESNK |
| .LFVDKIREEP.Y.MPMKIE.LV.EKW...VSR.QCQ.AR.KAL.WIE.EYD.QF.RLRDY.AEI..SN. |
Retrocopy | KLFVDKIREEPEYFMPMKIEELVMEKWKLSVSRPQCQHARNKALRWIEREYDEQFGRLRDYCAEIRSSNV |
|
Parental | DSTVVIETLKNTYGKDEFNRFYICFDNIRRTWKETCRPLLGVDGCFVKHKIKGQVLVALGRDADNAIYPV |
| .S.V....L.N..G...FNRFY.CFD..RRTWKET.RPL.GVD.CF.K...KG..LVALGRDADNAIYP. |
Retrocopy | NSSVELDCLRNDDGIEVFNRFYVCFDILRRTWKETFRPLIGVDDCFLKSRMKGKLLVALGRDADNAIYPI |
|
Parental | AWGVVQVENTDNWLWFVRMIREDLGLDDGDGFVIVSDRQKGLIAAVKEELPKVEHRKCVRHIYENLKKKH |
| AW.VVQVEN..NWLWFVR.I..DLGLD.G.G.V.VSDRQKGLIAAVK..L...EHR.CVRHIY.NLKK.H |
Retrocopy | AWAVVQVENNNNWLWFVRKIKVDLGLDEGEGYVMVSDRQKGLIAAVKRALSRIEHRMCVRHIYGNLKKLH |
|
Parental | GSKSDMKSYLWSLAWSYNEAEYKERLDRILNYDVGVYDDVMKTNPKSWCRAYHRLGPYCEDVENNSTESF |
| G.K..MK..LW.LAWSYN.A.YK..L.....YD..VYD.VMK..P..WCR....LG..CEDVEN.STESF |
Retrocopy | GKKPEMKLKLWNLAWSYNDADYKANLKYFERYDQDVYDYVMKAKPGKWCREFYKLGTFCEDVENSSTESF |
|
Parental | NNTIGKARELPFVPMFETIRRLAMARIAKRSAISHAHKGICTPYATEFLKVEKKKATECTITRSTNGMYE |
| NN.IGKAR..PFVPMFETI.RLAM.RIA.R..I...H.GICTPY..E.L.....KA..C....STN..YE |
Retrocopy | NNSIGKARDKPFVPMFETIARLAMVRIARRDVICSSHEGICTPYVIEMLESLHEKASKCMVQPSTNQTYE |
|
Parental | AKLGGCTHRVSSDRWTCTCMKFEICGIPCEHAYGVILHKKLKAEDFVCKWFRTSMWRRNYTDCLIPVRGA |
| .....C.HRVS....TC.C...EI.GIPCEHAYGV.L.K.L.A.DFV..WFR...WRR.Y.....P.RGA |
Retrocopy | STSNDCVHRVSLENKTCSCRRWEITGIPCEHAYGVMLKKGLEAQDFVVHWFRIATWRRTYAEGIVPLRGA |
|
Parental | RFWPQTSAPDVHIPPDPDQPGRKKLPKAEKKRKKPANESPTK-KQPKHKKRIMHCEV |
| .F.P....P....P..PDQP..KK..KA.KKR.K..NESP.K....K..K.IMHC.. |
Retrocopy | KF*PVGPEPSIIEPEIPDQPDHKKETKADKKREKGVNESPSK>XXEKFLKGIMHCGI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_63 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
4 retrocopies.