>retro_brap_32
ATGGAGAAGAATAAATGGAGTGGAAAAGCTTATAGTCAGAGGTATTACGAGATTCTTGAGAAACGGAAGAGCCTACCTGT
GTATGCGCAGAAACAAGAGTTTCTACAATGCTTGATGAGCAACCAGACGTTGATACTTGTCGGTGAAACCGGTAGTGGTA
AGACTACGCAGATCCCACAGTTTGTTTTGGAAGCCGTGAACGAAAAAAACCCTAGCAAGTGGCTGGTCGGGTGCACACAG
CCTCGTAGAGTCGCAGCCATGTCCGTGGCAAGTCGTGTTGCTGAAGAGATGGATGTAGCTATCGGTGAAGAAGTCGGTTA
CTCCGTTCGCTTTGAGGATTGCACTAGCTCCAAAACAGTGCTTAAGTACTTGACCGATGGTATGCTTATGAGAGAAGCAA
TGACCGATCCGCTTCTACAGAGATATAAAGTGATAGTCCTCGATGAAGCCCATGAAAGAACTTTAGCCACGGATTTACTA
TTTGGTGTTCTGAAACGAGTCTTGAGCAACAGACCGGACCTTAAGCTAGTTGTGATGAGTGCAACTTTGGAAGCTGAAAA
ATGTCTTGAGTATTTTAGCGGTGCACCTCTTATGAAAGTTCCGGGAAGGCTCCATCCCGTAGAGATCTTGTACACGCAAG
AACCTGAGAGAGACTATCTTGACGCTGCTATTCGGACAGTTGTTCAGATTCACATGTCTGAGCCGCCCGGTGATGTTCTT
GTTTTCTTAACCGGCGAGGAGGAGATTGAAGATGCATGCAGAAAAATCGTCTGTGAACTTGGGGATCAAGTAAACGTTGT
GCCTTTGTATTCTTCTCTTCCACCAGCCATGCAGCAGAAGATATTTGATCCTCCTACGGAGAATGTGAGGAAGATTGTTG
TATCCACCAACATAGCAGAGACTTCTTTAACCATCGATGGAGTTGTTTACGTGGTTGATCCTGGCTTCGCTAAGCAGAAA
CTATACAACCCTGAAACTCGTGTTGAGTCGTTGTTGGTGTCTGCAATATCACAAGCAAGTGCTAACCAGAGAGCTGGTCG
TGCAGGTAGAACACGGCCTGGGAAATGTTTCAGGCTTTACACAGAGAAGAGTTTCAACCATGATTTGATTGAGCAGACGT
ATCCTGAGATACTGAGATCAAACCTTGCAAACACTGTTCTGACTTTGAAAAAACTTGGTATAGATAACTTGGTTTGCTTC
GACTATATGGACCCTCCTGCTCCTGTGACGATGGGGCGGGCCTTGAACGATTTGCTTGATCTGGGAGCATTAGATGAAGA
ACTTAACTTGACAAGGACGGGTGAGATGATGAGTGAGTTTCCTTTGGATCCGCAGATGGCAAAGATGCTTATAGTCAGTC
CTAAATTCAACTGCTCCAACGAGATTCTCTCAATTTCAGCTATGTTATCAGTACCAAACTGCTTTGTAAGGCCAAGAGGA
GAGGCGCAAAAAGCAGCAGATGAAGCTAGAGCTAGGTTTGGTCACACTGATGGAGATCACCTAACGTTGCTGAATGTGTA
CCATGATTATAAACAAAACAACGGAGACCCGAATTGGTGCTACCAGAACTTCATCAACCATAGAGCAATGAAGTCTGCTG
ACAATGTTAGAGAGCAGTTGGTGAGGATAATGTCCAGGTTTAATCTCAAGACGTGTAGCTCTGATTTTACCAGCCGTGAC
TACTATATTAACATAAGAAAGGCATTGCTTGCTGGCTATTTCATGCAAGTGGCTCATTTAGACCGCACGGGCCACTACTT
GACCGCCAAAGATGGACAAATGGTTCACCTGCATCCATCGTGTTGCTTGGATCACAAACCGGAGTGGGTAGTCTACAATG
AATATGTTCTGACTAGTCGTAATTTCATAAGGACTGTCACGTATATTCGAGGTGAATGGCTAGTGGATGTTGCACCAGAT
TACTATCATCTTTCCAACTTCCCAAACTGTGAAGCCAAACGAGTCCTCCAGAAGCTTTCTAAGAAGAGAGACAGAGCGGG
GAACCCAAAGTGA
ORF - retro_brap_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.64 % |
Parental protein coverage: |
52.28 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRL |
| RKIVVSTNIAETSLTIDG.VYV.DPGFAKQK.YNP..RVESLLVS.IS.ASA.QR.GRAGRTRPGKCFRL |
Retrocopy | RKIVVSTNIAETSLTIDGVVYVVDPGFAKQKLYNPETRVESLLVSAISQASANQRAGRAGRTRPGKCFRL |
|
Parental | YTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGN |
| YTEKSFN.DL..QTYPEILRSNLANTVLTLKKLGID.LV.FD.MDPPAP.T..RAL..L..LGALD.E.N |
Retrocopy | YTEKSFNHDLIEQTYPEILRSNLANTVLTLKKLGIDNLVCFDYMDPPAPVTMGRALNDLLDLGALDEELN |
|
Parental | LTRTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPR-EAQKAADEAKSKFGHIDGD |
| LTRTGE.MSEFPLDPQM.KMLIVSP.FNCSNEILS.SAMLSVPNCFVRPR.EAQKAADEA...FGH.DGD |
Retrocopy | LTRTGEMMSEFPLDPQMAKMLIVSPKFNCSNEILSISAMLSVPNCFVRPRGEAQKAADEARARFGHTDGD |
|
Parental | HLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYYVNIRKAM |
| HLTLLNVYH.YKQNN.DPNWC..NF.N.RAMKSADNVR.QLVRIMSRFNLK.CS.DF.SRDYY.NIRKA. |
Retrocopy | HLTLLNVYHDYKQNNGDPNWCYQNFINHRAMKSADNVREQLVRIMSRFNLKTCSSDFTSRDYYINIRKAL |
|
Parental | LSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTTRNFIRTVTDIRGDWLVDVAP |
| L.GYFMQVAHL.RTGHYLT.KD.Q.VHLHPS.CLDHKPEWV.YNEYVLT.RNFIRTVT.IRG.WLVDVAP |
Retrocopy | LAGYFMQVAHLDRTGHYLTAKDGQMVHLHPSCCLDHKPEWVVYNEYVLTSRNFIRTVTYIRGEWLVDVAP |
|
Parental | HYYDLSNFPNCEAKRVLEKLYKKRERERN |
| .YY.LSNFPNCEAKRVL.KL.KKR.R..N |
Retrocopy | DYYHLSNFPNCEAKRVLQKLSKKRDRAGN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica rapa was not studied using RNA-Seq expression data.
Brassica rapa was not studied using ChIP-Seq data.
Brassica rapa was not studied using EST data.
Brassica rapa was not studied using FANTOM5 data.
retro_brap_32 was not experimentally validated.
Retrocopy orthology:
Brassica rapa does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.