Parental gene: | ESP3, Bra010168 |
| Aliases: | None |
| Description: | AT1G32490 (E=0.0) EMB2733, ESP3 | ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding |
| Organism: | Chinese cabbage (Brassica rapa) |
| Coordinates: | A06:20414788..20421609(-) |
>Bra010168
ATGGCGAGCAATGATTTGAAGACATGGGTTTCGGATAAGCTGATGGGGCTGCTTGGCTATTCTCAAATAACTCTTGTTAA
CTATGTCATTGTAAAGGCTAAGCAATCAAAGTCACCAGCTGAACTTGTTGGAGTGTTGATGGATAACGGATTTGCTTCTT
CTGGTGATACTCGTTCCTTTGCGGAAGAGATTTTTGCTAGAGTTCCTCATCAAACTGCTGCGGTGAATCTTTACCAACAA
CGGGAAGCAGAGGCAGCAATGCTAGTGAGGAAGCAACAAACATATGCTCTTATAGATGATGATGATGATGATGAAGACGA
AGTGGTTAAGGAGAAAAAACCTTCAGCTTCTGAATCTAAGAAGTCAGATAAGGGCAAGAAAAGGTTTAGAAAGAAAAGTG
GGCAGTCAGATGACAGTGATGAAGAGGTGCCTGTAAGAGAGGACAGTAGACACGTTCGAAGAAAGGTTTCTGAAGATGAG
GATGATGGTTCTGAGTCAGAAGAGGAAAGAGTGCGTGACCAAAAGGAGAAAGAAGAACTCGAGCAGCATATAAGAGATCG
TGATACTGCACGGACACGAAAGCTAACGGAGCAAAAGTTGTCAAAGAAAGAGCAAGAGGAGGCTCTTCGAAGAGCGAACG
CTTTGGAGGAGGATGATTTAAACTCCTTAAGGAAAGTTTCAAGACAAGAATATTTGAGGAAGAGGGAACAGAAGAAACTG
GAAGAACTAAGGGATGAGATAGAAGATGAACAATATCTTTTCGCAGATGAAAAGCTCACAGAAACAGAGCTTCGTGAGTT
TAGATACAAGAAAGAGCTTTATGACCTGGTGAAGAAAAGAACACAAGATGAAGATAACGTAGAGGAGTATAGAATTCCAG
ATGCTTATGATGATCAAGAGGGGGGTGTTGATCAGGAGAAGAGATTTGCTGTTGCTGTGCAACGATACAAGGATCTGGAT
TCAAGGGAGAAGATGGATCCATTTGCAGAGCAAGAAGCTTGGGAGGACCATCAGATTGGAAAAGCAAGACTAAAATTTGG
CTCAAAGAACAAAAAAGCCTCAGACGATTATCAGTTTGTGTTCGAGGACCAAATAAATTTTATAAAGGAATCAGTGATGG
CCGGTGAAAATTATGAAGATGATATGCATCCTAAAGAAGCTCAAGATGCGGCTGAAAAAACAGCTTTAGAAGAACTTCAG
GAGGTCAGAAAAAGCCTGCCAATTTACGGGTATCGTGAGCAGTTGCTTCAGGCCGTGGAAGAGCATCAGGTTCTTGTCAT
TGTGGGAGACACTGGTTCAGGAAAGACAACACAAATACCACAATATCTCCATGAAGCTGGTTACACAAAGCGCGGAAAGG
TTGGTTGTACACAGCCCCGAAGAGTTGCAGCTATGAGTGTTGCTGCCCGTGTGGCTCAAGAGATGGGTGTCAAACTTGGA
CATGAGGTTGGCTATTCCATTCGATTTGAGGATTGTACTTCAGATAAAACTGTTCTGAAGTATATGACTGATGGAATGCT
TTTGCGTGAGCTGCTTGGGGAACCAGATCTGGCCAGCTACAGTGTCGTTATTGTAGACGAGGCGCACGAAAGAACCTTGT
CAACCGATATACTGTTTGGATTAGATATAGCGCGGTTTCGACCAGATTTGAAGTTGTTGATATCTAGTGCAACAATGGAT
GCAGAAAAGTTTTCTGATTATTTCGATACAGCGCCGATTTTTAGTTTTCCAGGGAGAAGGTATCCAGTTGAAATTAACTT
TACAAGTGCACCTGAAGCTGATTACATGGACGCAGCAATAGTTACTGTGCTTACTATCCATGTGAGGGAGCCGCTTGGAG
ATATATTGGTCTTCTTAACTGGTCAAGAGGAAATTGAAACCGCAGAAGAAATCTTGAAGCAAAGGATAAGAGGTTTGGGT
ACAAAGATCCGTGAATTAATCATATGCCCGATTTACGCAAACCTTCCAAGCGAACTCCAAGCAAAGATATTTGAGCCAAC
TCCAGAAGGGGCACGTAAAGTAGTCCTAGCGACAAACATTGCTGAAACATCATTGACGATTGATGGTATAAAGTATGTTG
TTGATCCTGGATTTAGCAAGATGAAGTCATATAACCCGAGAACAGGGATGGAGTCTTTGCTGATTACTCCTATCTCCAAG
GCTTCAGCAACTCAACGTGCTGGTCGAGCTGGAAGAACAAGCGCAGGGAAGTGTTACCGTCTGTACACAGCGTTTAATTA
CAACAACGACTTGGAGGAAAACACGGTGCCAGAAGTACAGAGGACGAATCTTGCAAGTGTGGTACTTGCTTTAAAGAGTC
TTGGAATTCATGATCTCATAAACTTTGATTTTATGGACCCTCCACCTGCTGAAGCACTTGTGAAGGCTTTAGAGCTTCTC
TTCGCTCTAGGTGCTCTAAATAAGCTCGGTGAATTGACTAAAGCTGGTAGAAGGATGGCAGAGTTTCCCCTTGATCCGAT
GTTATCGAAGATGATTGTTGTTTCTGACAAGTACAAGTGCTCAGATGAGGTAATATCAATTGCTGCTATGTTGTCAGTTG
GAGGGTCTATCTTCTACCGTCCCAAGGACAAACAGGTTCACGCTGACAATGCAAGAATGAATTTTCACACTGGAAATGTC
GGTGACCATATTGCTTTGCTAAAGGTTTACAGCTCATGGAAGGAAACAAACTACTCTACACAGTGGTGCTATGAGAACTA
CATTCAGGTACGGAGCATGAAAAGAGCCAGAGATATCCGTGACCAGTTGGAAGGACTTCTCGAGAGAGTGGAGATAGAAA
TCAGCTCAAACATGAACGAATTGGATTCAGTTAGAAAGTCCATTGTAGCTGGTTTCTTCCCGCACACTGCGAAGCTGCAG
AAGAATGGATCATATCGAACTGTGAAGCATCCCCAGACAGTGCACATACATCCCAATTCAGGCTTATCTCAGGTGTTGCC
AAGATGGGTTGTATATCATGAACTAGTGCTCACCTCCAAGGAATATATGCGACAGGTAACGGAGTTGAAACCAGAGTGGT
TGATTGAGTTAGCTCCTCACTACTACCAGCGCAAGGACGTTGAAGATGATGCATCAAAGAAAATGCCCAAAGGAGCTGGT
AAAGCTGCGATCTAA
ATGGCGAGCAATGATTTGAAGACATGGGTTTCGGATAAGCTGATGGGGCTGCTTGGCTATTCTCAAATAACTCTTGTTAA
CTATGTCATTGTAAAGGCTAAGCAATCAAAGTCACCAGCTGAACTTGTTGGAGTGTTGATGGATAACGGATTTGCTTCTT
CTGGTGATACTCGTTCCTTTGCGGAAGAGATTTTTGCTAGAGTTCCTCATCAAACTGCTGCGGTGAATCTTTACCAACAA
CGGGAAGCAGAGGCAGCAATGCTAGTGAGGAAGCAACAAACATATGCTCTTATAGATGATGATGATGATGATGAAGACGA
AGTGGTTAAGGAGAAAAAACCTTCAGCTTCTGAATCTAAGAAGTCAGATAAGGGCAAGAAAAGGTTTAGAAAGAAAAGTG
GGCAGTCAGATGACAGTGATGAAGAGGTGCCTGTAAGAGAGGACAGTAGACACGTTCGAAGAAAGGTTTCTGAAGATGAG
GATGATGGTTCTGAGTCAGAAGAGGAAAGAGTGCGTGACCAAAAGGAGAAAGAAGAACTCGAGCAGCATATAAGAGATCG
TGATACTGCACGGACACGAAAGCTAACGGAGCAAAAGTTGTCAAAGAAAGAGCAAGAGGAGGCTCTTCGAAGAGCGAACG
CTTTGGAGGAGGATGATTTAAACTCCTTAAGGAAAGTTTCAAGACAAGAATATTTGAGGAAGAGGGAACAGAAGAAACTG
GAAGAACTAAGGGATGAGATAGAAGATGAACAATATCTTTTCGCAGATGAAAAGCTCACAGAAACAGAGCTTCGTGAGTT
TAGATACAAGAAAGAGCTTTATGACCTGGTGAAGAAAAGAACACAAGATGAAGATAACGTAGAGGAGTATAGAATTCCAG
ATGCTTATGATGATCAAGAGGGGGGTGTTGATCAGGAGAAGAGATTTGCTGTTGCTGTGCAACGATACAAGGATCTGGAT
TCAAGGGAGAAGATGGATCCATTTGCAGAGCAAGAAGCTTGGGAGGACCATCAGATTGGAAAAGCAAGACTAAAATTTGG
CTCAAAGAACAAAAAAGCCTCAGACGATTATCAGTTTGTGTTCGAGGACCAAATAAATTTTATAAAGGAATCAGTGATGG
CCGGTGAAAATTATGAAGATGATATGCATCCTAAAGAAGCTCAAGATGCGGCTGAAAAAACAGCTTTAGAAGAACTTCAG
GAGGTCAGAAAAAGCCTGCCAATTTACGGGTATCGTGAGCAGTTGCTTCAGGCCGTGGAAGAGCATCAGGTTCTTGTCAT
TGTGGGAGACACTGGTTCAGGAAAGACAACACAAATACCACAATATCTCCATGAAGCTGGTTACACAAAGCGCGGAAAGG
TTGGTTGTACACAGCCCCGAAGAGTTGCAGCTATGAGTGTTGCTGCCCGTGTGGCTCAAGAGATGGGTGTCAAACTTGGA
CATGAGGTTGGCTATTCCATTCGATTTGAGGATTGTACTTCAGATAAAACTGTTCTGAAGTATATGACTGATGGAATGCT
TTTGCGTGAGCTGCTTGGGGAACCAGATCTGGCCAGCTACAGTGTCGTTATTGTAGACGAGGCGCACGAAAGAACCTTGT
CAACCGATATACTGTTTGGATTAGATATAGCGCGGTTTCGACCAGATTTGAAGTTGTTGATATCTAGTGCAACAATGGAT
GCAGAAAAGTTTTCTGATTATTTCGATACAGCGCCGATTTTTAGTTTTCCAGGGAGAAGGTATCCAGTTGAAATTAACTT
TACAAGTGCACCTGAAGCTGATTACATGGACGCAGCAATAGTTACTGTGCTTACTATCCATGTGAGGGAGCCGCTTGGAG
ATATATTGGTCTTCTTAACTGGTCAAGAGGAAATTGAAACCGCAGAAGAAATCTTGAAGCAAAGGATAAGAGGTTTGGGT
ACAAAGATCCGTGAATTAATCATATGCCCGATTTACGCAAACCTTCCAAGCGAACTCCAAGCAAAGATATTTGAGCCAAC
TCCAGAAGGGGCACGTAAAGTAGTCCTAGCGACAAACATTGCTGAAACATCATTGACGATTGATGGTATAAAGTATGTTG
TTGATCCTGGATTTAGCAAGATGAAGTCATATAACCCGAGAACAGGGATGGAGTCTTTGCTGATTACTCCTATCTCCAAG
GCTTCAGCAACTCAACGTGCTGGTCGAGCTGGAAGAACAAGCGCAGGGAAGTGTTACCGTCTGTACACAGCGTTTAATTA
CAACAACGACTTGGAGGAAAACACGGTGCCAGAAGTACAGAGGACGAATCTTGCAAGTGTGGTACTTGCTTTAAAGAGTC
TTGGAATTCATGATCTCATAAACTTTGATTTTATGGACCCTCCACCTGCTGAAGCACTTGTGAAGGCTTTAGAGCTTCTC
TTCGCTCTAGGTGCTCTAAATAAGCTCGGTGAATTGACTAAAGCTGGTAGAAGGATGGCAGAGTTTCCCCTTGATCCGAT
GTTATCGAAGATGATTGTTGTTTCTGACAAGTACAAGTGCTCAGATGAGGTAATATCAATTGCTGCTATGTTGTCAGTTG
GAGGGTCTATCTTCTACCGTCCCAAGGACAAACAGGTTCACGCTGACAATGCAAGAATGAATTTTCACACTGGAAATGTC
GGTGACCATATTGCTTTGCTAAAGGTTTACAGCTCATGGAAGGAAACAAACTACTCTACACAGTGGTGCTATGAGAACTA
CATTCAGGTACGGAGCATGAAAAGAGCCAGAGATATCCGTGACCAGTTGGAAGGACTTCTCGAGAGAGTGGAGATAGAAA
TCAGCTCAAACATGAACGAATTGGATTCAGTTAGAAAGTCCATTGTAGCTGGTTTCTTCCCGCACACTGCGAAGCTGCAG
AAGAATGGATCATATCGAACTGTGAAGCATCCCCAGACAGTGCACATACATCCCAATTCAGGCTTATCTCAGGTGTTGCC
AAGATGGGTTGTATATCATGAACTAGTGCTCACCTCCAAGGAATATATGCGACAGGTAACGGAGTTGAAACCAGAGTGGT
TGATTGAGTTAGCTCCTCACTACTACCAGCGCAAGGACGTTGAAGATGATGCATCAAAGAAAATGCCCAAAGGAGCTGGT
AAAGCTGCGATCTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Oryza sativa indica | BGIOSGA027162 | ortholog_many2many | 1 retrogene | |
| Brassica oleracea | Bo5g087070 | ortholog_one2one | 1 retrogene | |
| Brassica rapa | Bra000445 | within_species_paralog | 1 retrogene | |
| Brachypodium distachyon | BRADI1G61220 | ortholog_many2many | 1 retrogene | |
| Glycine max | GLYMA06G21821 | ortholog_one2many | 1 retrogene | |
| Leersia perrieri | LPERR08G09260 | ortholog_many2many | 1 retrogene | |
| Hordeum vulgare | MLOC_5589 | ortholog_many2many | 1 retrogene | |
| Oryza meridionalis | OMERI08G09070 | ortholog_many2many | 1 retrogene | |
| Oryza nivara | ONIVA08G11780 | ortholog_many2many | 1 retrogene | |
| Oryza punctata | OPUNC08G10350 | ortholog_many2many | 1 retrogene | |
| Oryza glaberrima | ORGLA08G0098600 | ortholog_many2many | 1 retrogene | |
| Oryza rufipogon | ORUFI08G12410 | ortholog_many2many | 1 retrogene | |
| Prunus persica | PRUPE_ppa000714mg | ortholog_one2many | 1 retrogene | |
| Sorghum bicolor | Sb04g022460 | ortholog_many2many | 1 retrogene | |
| Setaria italica | Si021302m.g | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_brap_26 | 72.01 | 60.54 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all Bra010168 retrocopies