RetrogeneDB ID: | retro_btau_1456 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:59001804..59002228(+) | ||
Located in intron of: | ENSBTAG00000013699 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLBP | ||
Ensembl ID: | ENSBTAG00000001328 | ||
Aliases: | None | ||
Description: | histone RNA hairpin-binding protein [Source:RefSeq peptide;Acc:NP_001039345] |
Percent Identity: | 71.53 % |
Parental protein coverage: | 51.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SRCSDWASAVEEDEMRTSVNKEIARYKRKLLINDFGRERKSSSGSSDSKESVSALPADLETDESVLMRRQ |
SRCSDWAS.VEEDEMR..VNKEI..Y.RK..INDFGRERKSSSGS..SKE.VSAL.A.L.TDE.VLMR.Q | |
Retrocopy | SRCSDWASIVEEDEMRSTVNKEISSYRRKHFINDFGRERKSSSGSLASKEPVSALSANLKTDERVLMRSQ |
Parental | KQINYGKNTIAYDRYIKEVPRHLRQPGVHPKTPNKFK-KYSRRSWDQQIRLWKVALHFW-DPPAEEGCDL |
.QI.YGKNTIA.DRYIKEVP.HL.QPG.HP.TP..FK.KYS...WDQQ...WKV.L.....PPAEEGCDL | |
Retrocopy | MQITYGKNTIACDRYIKEVPGHL*QPGIHPETPSEFK<KYSQ*YWDQQTKSWKVFLQLR<GPPAEEGCDL |
Parental | QEIH |
Q... | |
Retrocopy | QDMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 12 .47 RPM |
ERP005899_muscle | 0 .00 RPM | 24 .60 RPM |
SRP017611_brain | 0 .05 RPM | 23 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .00 RPM |
SRP017611_liver | 0 .00 RPM | 8 .83 RPM |
SRP030211_testis | 0 .09 RPM | 58 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001328 | 1 retrocopy |
retro_btau_1456 ,
|
Cavia porcellus | ENSCPOG00000000031 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004642 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009750 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002807 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000037162 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000376 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000010901 | 1 retrocopy |