RetrogeneDB ID: | retro_btau_1510 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:109162853..109163614(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BLMH | ||
Ensembl ID: | ENSBTAG00000021370 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.82 % |
Parental protein coverage: | 55.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | FLNAFVDTAQKKEPEDGRLVQYLLMNPANDGGQWDMLV-NIVEKYGVIPKKCFPETYTTEATRRMNDILN |
FLNAFVDTAQKKEPEDGRLVQYLLMNP.NDGGQWDMLV..IVEKYGVIPKKCFPETYTTEATRRMNDIL. | |
Retrocopy | FLNAFVDTAQKKEPEDGRLVQYLLMNPTNDGGQWDMLV<HIVEKYGVIPKKCFPETYTTEATRRMNDILD |
Parental | HKMREFCIRLRNLVHSGATKEEISATQDSMMEEIFRVVCICLGNPPETFTWEYRDKDKNYQKIGPITPLK |
HKMREFCI.LRNLVH.GATKEEISATQDSMMEEIFRVVCICLGNPPETF.W.Y.DKDKNYQK.GPIT.LK | |
Retrocopy | HKMREFCI*LRNLVHTGATKEEISATQDSMMEEIFRVVCICLGNPPETFIWKYGDKDKNYQKTGPITSLK |
Parental | FYRQHVKPLFNMEDKICLVNDPRPQHKYNKLYTVDYLSNMVGGRKTLYNNQPVDFLKKMVAA-SIKDGEA |
FYR.HVK.LFNMEDKI.LVNDPRPQHKYNKLY.VDYLSNMV.GRK.L...QP.....K...A.SI.DGEA | |
Retrocopy | FYREHVKLLFNMEDKIRLVNDPRPQHKYNKLYPVDYLSNMVRGRKPL--*QPAR*VLKKMVAASIRDGEA |
Parental | VWFGCDVGKHFNGKLGLSDMNVYDHELVFGVSMKNMNKAERLTFGES |
VWFGCDVGKHF.GKLGLSD.N..DH.LVFGVS..N..KAERLTFGES | |
Retrocopy | VWFGCDVGKHFSGKLGLSDVNICDHGLVFGVSIENVSKAERLTFGES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 12 .40 RPM |
ERP005899_muscle | 0 .00 RPM | 35 .32 RPM |
SRP017611_brain | 0 .09 RPM | 12 .61 RPM |
SRP017611_kidney | 0 .12 RPM | 28 .39 RPM |
SRP017611_liver | 0 .00 RPM | 22 .95 RPM |
SRP030211_testis | 2 .41 RPM | 35 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021370 | 1 retrocopy |
retro_btau_1510 ,
|
Callithrix jacchus | ENSCJAG00000013781 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005048 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008938 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003563 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016341 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003571 | 1 retrocopy |