RetrogeneDB ID: | retro_meug_2120 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold92153:250..1597(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000001319 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BLMH | ||
Ensembl ID: | ENSMEUG00000008938 | ||
Aliases: | None | ||
Description: | bleomycin hydrolase [Source:HGNC Symbol;Acc:1059] |
Percent Identity: | 99.11 % |
Parental protein coverage: | 85.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASLSPRKVAAVLQKLSADPLFSLAQNVGSSHDLLDVCLRRSTVQDTQHVFQHAVPQEGKPVTNQKNSGRC |
A.LSPRKVAAVLQKLSADPLFSLAQNVGSSHDLLDVCLRRSTVQDTQHVFQHAVPQEGKPVTNQKNSGRC | |
Retrocopy | AGLSPRKVAAVLQKLSADPLFSLAQNVGSSHDLLDVCLRRSTVQDTQHVFQHAVPQEGKPVTNQKNSGRC |
Parental | WIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLNAFVETAEEPEDGRLVQYLLTNPANDGG |
WIFSCLNVMRLPFMKKLNIEEFEFS.SYLFFWDKVERC.FFLNAFVETAEEPEDGRLVQYLLTNPANDGG | |
Retrocopy | WIFSCLNVMRLPFMKKLNIEEFEFSHSYLFFWDKVERCCFFLNAFVETAEEPEDGRLVQYLLTNPANDGG |
Parental | QWDMLVNIVEKYGVVPKKCFPESHTTEASRRMNDILNHKMREYCIRLRNLVKSGATEEDICTTQDTMMEE |
QWDMLVNIVEKYGVVPKKCFPESHTTEASRRMNDILNHKMREYCIRLRNLVKSGATEEDICTTQDTMMEE | |
Retrocopy | QWDMLVNIVEKYGVVPKKCFPESHTTEASRRMNDILNHKMREYCIRLRNLVKSGATEEDICTTQDTMMEE |
Parental | VFRVVSICLGTPPDKFTWEYRDKDKTYHKIGPISPLEFYREHIKPFFNMQDKICLVNDPRSQHKYNRLYT |
VFRVVSICLGTPPDKFTWEYRDKDKTYHKIGPISPLEFYREHIKPFFNMQDKICLVNDPRSQHKYNRLYT | |
Retrocopy | VFRVVSICLGTPPDKFTWEYRDKDKTYHKIGPISPLEFYREHIKPFFNMQDKICLVNDPRSQHKYNRLYT |
Parental | VEYLSNMIGGRKTLYNNQPIDFLKKMVAASIKEGEAVWFGCDVGKHFNGKLGISDMQIYDHELVFGVSLK |
VEYLSNMIGGRKTLYNNQPIDFLKKMVAASIKEGEAVWFGCDVGKHFNGKLGISDMQIYDHELVFGVSLK | |
Retrocopy | VEYLSNMIGGRKTLYNNQPIDFLKKMVAASIKEGEAVWFGCDVGKHFNGKLGISDMQIYDHELVFGVSLK |
Parental | NMNKAERLTFGESLMTHAMTFTAVTEDAREGTYEKWRVENSWGEDHGHKGYLCMTDQWFSEYVYEVVVDK |
NMNKAERLTFGESLMTHAMTFTAVTEDAREGTYEKWRVENSWGEDHGHKGYLCMTDQWFS.YVYEVVVDK | |
Retrocopy | NMNKAERLTFGESLMTHAMTFTAVTEDAREGTYEKWRVENSWGEDHGHKGYLCMTDQWFSDYVYEVVVDK |
Parental | KHVPEDVLAVLKQEPIVLPAWDPMGALAK |
KHVPEDVLAVLKQEPIVLPAWDPMGALAK | |
Retrocopy | KHVPEDVLAVLKQEPIVLPAWDPMGALAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021370 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013781 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005048 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008938 | 1 retrocopy |
retro_meug_2120 ,
|
Rattus norvegicus | ENSRNOG00000003563 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016341 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003571 | 1 retrocopy |