>retro_btau_1534
ATGTCTGAAGATGAAGAAAAAGTGAAATTATGCCTTCCTGAACCAGCTATCCAGAAATTTACTAAAATGGCAATCCCAAC
AGACCTGGAGATGTTACAAAAGTGCCAGATAAATATTGAGAAGTATTAGAGGTGCTGAACATGGGACCAGTACATGAAGA
GCATGTCAATGCAGGACGTACAGTTCAGCAACTCTGCTGCAATATTGGAGGAATGGAGAAGCTTTGTTTTAAAGTCCAAA
AGGGTGACCTAAGACTTCTAAAGAGAATGATAGATTCTGTTGAAAACGCGTCAGCTGCAACAGCAGGATTTTTCCAACTC
CATCTAGCATCTGTAGAAGAACTTAAGAAACAATTTAATGATGAAGAAACTTTATTACAGCCTTCTTTAGATCCATGACT
GACAACATTTCATACTACTGAAGATGAAGCTGATCCTCAGAGTATGACTCAGATGTATGCGTTGCCTGAAACGCCTCAAG
ATTAAAATACTGCAGAATCATGGGAGACCTTAGAAGCGGACTTAAATGAACTTAACCAACTGGTCCCACTGATTTCTCTC
TCCTAGTGAATTTTCAGCAGGAGAAGATTGACAGCACTGAAGACCATGTCAACAGTGCTGCTGTGAATATTGAAGAGGGA
ACCAAAACATGGGGGAAGGCTGAAAAATACAAGTTGGCAGCCCTACCTGTGGCAGGCGCACTCAGAGGAGGAGTGGTGAA
GGGTCAGATTGGCCTCCTTGATGCTTCAAAGCGTCAGAAATTGCAGCTGCACTTGGTGGTGGGGTGTTGCGCTTCACAGG
TGGAAAAGTGATA
ORF - retro_btau_1534 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.84 % |
Parental protein coverage: |
91.06 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MSEDEEKVKLRRLEPAIQKFTKIVIPTDLERLRKHQINIEKYQRCRVWDK-LHEEHINAGRTVQQLRSNI |
| MSEDEEKVKL...EPAIQKFTK..IPTDLE.L.K.QINIEKY.RC..WD...HEEH.NAGRTVQQL..NI |
Retrocopy | MSEDEEKVKLCLPEPAIQKFTKMAIPTDLEMLQKCQINIEKY*RC*TWDQ<VHEEHVNAGRTVQQLCCNI |
|
Parental | REMEKLCLKVRKDDLGLLKRMIDPVKEEASAATAEFLQLHLESVEELKKQFNDEETFLQPSLTRSMTVGG |
| ..MEKLC.KV.K.DL.LLKRMID.V.E.ASAATA.F.QLHL.SVEELKKQFNDEET.LQPSL....T... |
Retrocopy | GGMEKLCFKVQKGDLRLLKRMIDSV-ENASAATAGFFQLHLASVEELKKQFNDEETLLQPSLDP*LT--- |
|
Parental | TFHSTEDEADPQSMTQIYALPEIPRDQNAAESWETLEADLIELSQLVTDFSL-LVNSQQEK-IDSIEDHV |
| TFH.TEDEADPQSMTQ.YALPE.P.D.N.AESWETLEADL.EL.QLV...SL.L....Q...IDS.EDHV |
Retrocopy | TFHTTEDEADPQSMTQMYALPETPQD*NTAESWETLEADLNELNQLVPLISL<LLVNFQQEKIDSTEDHV |
|
Parental | NTAAVNVEEGTKNLGKAAKYKLAALPVAGALIGGVVGGPIGLLAG-FKVAGIAAALGGGVLGFTGGKLI |
| N.AAVN.EEGTK..GKA.KYKLAALPVAGAL.GGVV.G.IGLL...FK...IAAALGGGVL.FTGGK.I |
Retrocopy | NSAAVNIEEGTKTWGKAEKYKLAALPVAGALRGGVVKGQIGLLDA<FKASEIAAALGGGVLRFTGGKVI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
6 .78 RPM |
ERP005899_muscle |
0 .00 RPM |
13 .46 RPM |
SRP017611_brain |
0 .00 RPM |
6 .03 RPM |
SRP017611_kidney |
0 .00 RPM |
9 .60 RPM |
SRP017611_liver |
0 .00 RPM |
4 .91 RPM |
SRP030211_testis |
0 .00 RPM |
5 .67 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1534 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1534 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1534 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.