>retro_btau_1597
ATGGGCTACTGTGTCAAGTCTCCACTGGTCTGTCTCTCAAGGAAGATGTGCCAAGAGGAGACCAGCTACACAGTGATGCA
GATGAGTGAGGAGGGGCTGGCAGCCAGTGTGAGCTTCGCAGGCCCCTCTTGATGCTGGCTCAGAACTGCGCAGTCATGCA
CAACCTGCTGGGCCCAGCCTTCATCTTCCTGCATAAGGGCTTTGCAGAGAACAGGCAGCCTGACAGATCTCTGTGGCCAG
AGGAGATTGAAGAGCTCAGGGAGACCATCAGAAAATTTGACAAGGACGAAGATGGCTACATCAACTGCCGGGACCTGGGT
AACTGCATGCGCACCATGGGTTACATGCCCACAGAGATGGAGCTCATCGAGCTGTCCCAGCAGATCAATATGAACCGGGG
TGACCACTTGGATTTTGATGACTTTGTGGAACTAATGGGACCTAAACTCCTGGCGGAGACAGTAGATATAATTGGAGTAA
AGGAACTGTGAGATGCCTTCGGAGAGTTTGACACCAGTGGTGATGGGGAGATAAGCACCAGTGAGTTACCAGAGGCCATG
AGGAAACTCCTGGGCCATCAGGTGGGACACCGAGACATAGAGCAAATTATCCAAGTTGTGGACCTCAAT
ORF - retro_btau_1597 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.78 % |
Parental protein coverage: |
92.92 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MGNCVKSPLRNLSRKMRQEETSYTVVQTSEEGLAASGELPGP-LLMLAQNCAVMHNLLGPACIFLRKGFA |
| MG.CVKSPL..LSRKM.QEETSYTV.Q.SEEGLAAS....GP.LLMLAQNCAVMHNLLGPA.IFL.KGFA |
Retrocopy | MGYCVKSPLVCLSRKMCQEETSYTVMQMSEEGLAASVSFAGP<LLMLAQNCAVMHNLLGPAFIFLHKGFA |
|
Parental | ENRQPDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDF |
| ENRQPDRSL.PEEIEELRE..R.FDKD.DGYINCRDLGNCMRTMGYMPTEMELIELSQQINMN.G.H.DF |
Retrocopy | ENRQPDRSLWPEEIEELRETIRKFDKDEDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNRGDHLDF |
|
Parental | DDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDL |
| DDFVELMGPKLLAET.D.IGVKEL.DAF.EFDT.GDGEISTSEL.EAMRKLLGHQVGHRDIE.II..VDL |
Retrocopy | DDFVELMGPKLLAETVDIIGVKEL*DAFGEFDTSGDGEISTSELPEAMRKLLGHQVGHRDIEQIIQVVDL |
|
Parental | N |
| N |
Retrocopy | N |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
0 .00 RPM |
ERP005899_muscle |
0 .00 RPM |
0 .05 RPM |
SRP017611_brain |
0 .00 RPM |
41 .34 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .30 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
SRP030211_testis |
0 .00 RPM |
11 .14 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1597 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1597 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1597 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.