RetrogeneDB ID: | retro_btau_135 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 20:8066407..8066857(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000032705 | |
Aliases: | CALM, CALM2 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM | ||
Ensembl ID: | ENSBTAG00000014583 | ||
Aliases: | None | ||
Description: | Calmodulin [Source:UniProtKB/Swiss-Prot;Acc:P62157] |
Percent Identity: | 98.66 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
MADQLTEEQIAEF.EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL | |
Retrocopy | MADQLTEEQIAEFQEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE | |
Retrocopy | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
Parental | EFVQMMTAK |
EFV.MMTAK | |
Retrocopy | EFVHMMTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .14 RPM | 13 .91 RPM |
ERP005899_muscle | 0 .53 RPM | 445 .22 RPM |
SRP017611_brain | 5 .39 RPM | 872 .16 RPM |
SRP017611_kidney | 1 .60 RPM | 119 .85 RPM |
SRP017611_liver | 0 .68 RPM | 23 .48 RPM |
SRP030211_testis | 1 .70 RPM | 504 .50 RPM |