RetrogeneDB ID: | retro_btau_1740 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:42441679..42442015(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.20582 | ||
Ensembl ID: | ENSBTAG00000018527 | ||
Aliases: | None | ||
Description: | hepatoma-derived growth factor-related protein 3 [Source:RefSeq peptide;Acc:NP_001178297] |
Percent Identity: | 73.45 % |
Parental protein coverage: | 61.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEI |
MKGY.H.P..IDELPEGAVKPP..KYPIFF.......F..P.........K.KFGKSNK.K.FNEGLWEI | |
Retrocopy | MKGYLH*PTGIDELPEGAVKPPGSKYPIFFLAPTKLLF*VPNSSSLTRNTK-KFGKSNKCKEFNEGLWEI |
Parental | ENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEE |
ENNPGVKFTGYQAIQ.QSSSETEGEGGNT.D.SSEEEGDRVEE | |
Retrocopy | ENNPGVKFTGYQAIQPQSSSETEGEGGNTTDTSSEEEGDRVEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 2 .16 RPM |
ERP005899_muscle | 0 .00 RPM | 4 .43 RPM |
SRP017611_brain | 0 .00 RPM | 28 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .78 RPM |
SRP017611_liver | 0 .00 RPM | 0 .76 RPM |
SRP030211_testis | 0 .02 RPM | 51 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018527 | 1 retrocopy |
retro_btau_1740 ,
|
Bos taurus | ENSBTAG00000039793 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015775 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000003696 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000010466 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002512 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000028389 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004950 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004599 | 1 retrocopy |