RetrogeneDB ID: | retro_dnov_819 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_11019:71724..72029(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000003696 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.73 % |
Parental protein coverage: | 50.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGY |
DELP..A.KPP..K.P.FF.G..E.AFL..KDLFP.KEY.DKFGKSNK..G.NEGLWE.ENNPGVKFTGY | |
Retrocopy | DELPQEALKPPPSKCPTFFVGIQENAFLSLKDLFPFKEYEDKFGKSNKH*GVNEGLWEVENNPGVKFTGY |
Parental | QAIQQQSSSETEGE-GGNTADASSEEEGDRVEE |
QAIQQQSSSETEGE...NTADASS.EEGD.VE. | |
Retrocopy | QAIQQQSSSETEGE<SRNTADASSKEEGDGVED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 31 .11 RPM |
SRP012922_cerebellum | 0 .00 RPM | 60 .35 RPM |
SRP012922_heart | 0 .00 RPM | 29 .24 RPM |
SRP012922_kidney | 0 .00 RPM | 49 .56 RPM |
SRP012922_liver | 0 .00 RPM | 4 .33 RPM |
SRP012922_lung | 0 .00 RPM | 53 .61 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 14 .54 RPM |
SRP012922_spleen | 0 .00 RPM | 38 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018527 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015775 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000003696 | 2 retrocopies |
retro_dnov_619, retro_dnov_819 ,
|
Dasypus novemcinctus | ENSDNOG00000010231 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010466 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002512 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000028389 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004950 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004599 | 1 retrocopy |