>retro_btau_282
CTGCAAAAGTGACGCGTGCGCGTCACCGGCAAGTATGACCGGCTGGAGCTGCAGCTAAGCCTGGAGGTGGAGAAGTGGAT
CGACGGGCGCTTGGAGGAGTTGTTCAGCGCAGGGAGGCAGACAATGAGGTCAACATCGTGAATTGTTGAAACTAGAGAGC
GAAGAGGAGAGAAGCCAGAACAGCCAGGGATCTTCTAAAGTCCTGCACAAACCCCACAGAGGGCTTCATCCAGGAACTGC
TGGTGAAGCCCCGAGGCCTCCACAAGCAGCCAACTTTCTGCCAGCCCAGCTCCTTCGGCGGCGGCAGCCTGAGCCCCTCC
AGGACCGAGCCCGGAAGGCGCCGCCT
ORF - retro_btau_282 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
71.31 % |
Parental protein coverage: |
80.27 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | LQKRHARVTVKYDRRELQRRLDVEKWIDGRLEELYRG-READMPDEVNI-DELLELESEEERSRKIQG-L |
| LQK...RVT.KYDR.ELQ..L.VEKWIDGRLEEL....READ...EVNI..ELL.LESEEERS...QG.L |
Retrocopy | LQK*RVRVTGKYDRLELQLSLEVEKWIDGRLEELFSA<READ--NEVNI<RELLKLESEEERSQNSQG>L |
|
Parental | LKSCTNPTEDFVQELLAKLRGLHKQPGLRQPSPSGDGSLSPR-QDRARTAPP |
| LKSCTNPTE.F.QELL.K.RGLHKQP...QPS..G.GSLSP..QDRAR.APP |
Retrocopy | LKSCTNPTEGFIQELLVKPRGLHKQPTFCQPSSFGGGSLSPS<QDRARKAPP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
0 .65 RPM |
ERP005899_muscle |
0 .00 RPM |
5 .28 RPM |
SRP017611_brain |
0 .00 RPM |
38 .37 RPM |
SRP017611_kidney |
0 .00 RPM |
4 .21 RPM |
SRP017611_liver |
0 .00 RPM |
1 .89 RPM |
SRP030211_testis |
0 .01 RPM |
15 .10 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_282 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_282 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_282 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.