RetrogeneDB ID: | retro_btau_161 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:57583909..57584338(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000032450 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1R14C | ||
Ensembl ID: | ENSBTAG00000026586 | ||
Aliases: | None | ||
Description: | protein phosphatase 1, regulatory (inhibitor) subunit 14C [Source:RefSeq peptide;Acc:NP_001071536] |
Percent Identity: | 50.72 % |
Parental protein coverage: | 81.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASGSPGSSSGSGSSREDSAPV-ATAAPAGHVQQQQQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQL |
A...PG...G............A.....G.V............QGKVTVKY.RKELRKRL.LEEW..EQL | |
Retrocopy | ADSGPGPRTGEWRPKGPASTFRAPLGLQGRVRGARINKDPVRPQGKVTVKYYRKELRKRLILEEWVLEQL |
Parental | GQLYGCEEEEMPDVEIDIDDLLDADSEEERALKLREALVDCYKPTEEFIKELLSRIRGMRKLSPPQKK |
..LY.C.EEE.P..EID.D.L....S...RA....E.LVDCYKPTE.FI..LL..IRGM.KLS.PQKK | |
Retrocopy | THLYDCQEEEIPELEIDGDELPVTESDNTRAARVKELLVDCYKPTEAFISDLLDKIRGMQKLSTPQKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .50 RPM | 0 .00 RPM |
ERP005899_muscle | 1 .06 RPM | 0 .11 RPM |
SRP017611_brain | 1 .46 RPM | 3 .84 RPM |
SRP017611_kidney | 3 .32 RPM | 6 .40 RPM |
SRP017611_liver | 2 .72 RPM | 0 .00 RPM |
SRP030211_testis | 3 .43 RPM | 0 .38 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000023472 | 1 retrocopy | |
Bos taurus | ENSBTAG00000026586 | 2 retrocopies |
retro_btau_161 , retro_btau_571,
|
Dasypus novemcinctus | ENSDNOG00000017261 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000023245 | 2 retrocopies | |
Mus musculus | ENSMUSG00000040653 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017102 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000002873 | 1 retrocopy |