RetrogeneDB ID: | retro_btau_429 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 11:29905014..29905534(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.49063 | ||
Ensembl ID: | ENSBTAG00000009345 | ||
Aliases: | None | ||
Description: | archaemetzincin-2 [Source:RefSeq peptide;Acc:NP_001029653] |
Percent Identity: | 61.67 % |
Parental protein coverage: | 53.01 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | LLNEAFRPRSDLFGPITLHS-PSDWIISHPEAPQDFEQFFSNLHRKSPSPGKQTIYIQCIG-LLGNTRSI |
LL.E.F.....LFG.ITLH...SDW..SH..APQDFE.FFSN..RK..S..K.....QC.G.LLGNTR.I | |
Retrocopy | LLMEDFQADNGLFGSITLHL<TSDWVTSHLGAPQDFEHFFSNPYRKTSSSEKCSMVTQCNG>LLGNTRVI |
Parental | SEEYLKWLKGYCEAFFYGLTVKLLEPIPVSATRCSFRI-NDSTLNLQ-IHAGQILTFLKKKKPEDAFCVV |
SE.Y.K.LKGY.EAF.YG..VKLLE....S.T.CSF...N..T...Q.IHAG.IL.FLK.K.PEDAFCVV | |
Retrocopy | SEKYIK*LKGYFEAFCYG*IVKLLELVLISVTECSFSA<NENT*SPQ<IHAGHILKFLKEKEPEDAFCVV |
Parental | GVTMIDLYPRESWNFVFGQASLTEGVGIFSFARYGTDFYS |
.VTM.DLYPR.S..FVFGQASLT.G....SFARY..DF.S | |
Retrocopy | TVTMVDLYPRGS*HFVFGQASLTAGWA--SFARYDSDFIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 29 .27 RPM |
ERP005899_muscle | 0 .05 RPM | 58 .60 RPM |
SRP017611_brain | 0 .00 RPM | 62 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 77 .17 RPM |
SRP017611_liver | 0 .00 RPM | 41 .68 RPM |
SRP030211_testis | 0 .00 RPM | 406 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009345 | 1 retrocopy |
retro_btau_429 ,
|
Choloepus hoffmanni | ENSCHOG00000000493 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000254 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000013061 | 1 retrocopy | |
Equus caballus | ENSECAG00000011450 | 2 retrocopies | |
Felis catus | ENSFCAG00000019195 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006771 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014570 | 1 retrocopy |